3X0X Oxidoreductase date Oct 23, 2014
title Crystal Structure Of Apo-Dszc From Rhodococcus Erythropolis
authors L.J.Guan, W.C.Lee, S.P.Wang, J.Ohtsuka, M.Tanokura
compound source
Molecule: Dszc
Chain: A, B, D, C, E, F, G, H
Synonym: Monooxygenase
Engineered: Yes
Organism_scientific: Rhodococcus Erythropolis
Organism_taxid: 1833
Strain: D-1
Gene: Dszc
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-28a
symmetry Space Group: C 1 2 1
R_factor 0.186 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
146.130 123.250 184.270 90.00 101.21 90.00
method X-Ray Diffractionresolution 2.11 Å
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Primary referenceCrystal structures of apo-DszC and FMN-bound DszC from Rhodococcus erythropolis D-1., Guan LJ, Lee WC, Wang S, Ohshiro T, Izumi Y, Ohtsuka J, Tanokura M, FEBS J. 2015 Jan 28. doi: 10.1111/febs.13216. PMID:25627402
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (523 Kb) [Save to disk]
  • Biological Unit Coordinates (3x0x.pdb1.gz) 264 Kb
  • Biological Unit Coordinates (3x0x.pdb2.gz) 258 Kb
  • CSU: Contacts of Structural Units for 3X0X
  • Structure Factors (3488 Kb)
  • Retrieve 3X0X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3X0X from S2C, [Save to disk]
  • Re-refined 3x0x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3X0X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3X0X
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3X0X, from MSDmotif at EBI
  • Fold representative 3x0x from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3x0x_A] [3x0x_C] [3x0x_B] [3x0x] [3x0x_F] [3x0x_H] [3x0x_D] [3x0x_G] [3x0x_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3X0X
  • Community annotation for 3X0X at PDBWiki (http://pdbwiki.org)

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