3X1L	Rna Binding Protein Rna Dna	date	Nov 20, 2014
title	Crystal Structure Of The Crispr-Cas Rna Silencing Cmr Comple A Target Analog
authors	T.Osawa, T.Numata
compound		source
Molecule: Crispr System Cmr Subunit Cmr2 Chain: A Synonym: Crispr-Associated Protein Cas10cmr2, Subtype III- Engineered: Yes		Organism_scientific: Pyrococcus Furiosus Dsm 3638 Organism_taxid: 186497 Gene: Cmr2, Pf1129 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Crispr System Cmr Subunit Cmr3 Chain: B Synonym: Crispr Type III-Bramp Module-Associated Protein C Engineered: Yes		Organism_scientific: Pyrococcus Furiosus Dsm 3638 Organism_taxid: 186497 Gene: Cmr3, Pf1128 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Cmr4 Chain: C, D, E Engineered: Yes		Organism_scientific: Archaeoglobus Fulgidus Dsm 4304 Organism_taxid: 224325 Gene: Af_1863 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Crispr System Cmr Subunit Cmr5 Chain: F, G Synonym: Crispr Type III-Bramp Module-Associated Protein C Engineered: Yes		Organism_scientific: Archaeoglobus Fulgidus Dsm 4304 Organism_taxid: 224325 Gene: Af_1861 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Cmr6 Chain: H Engineered: Yes		Organism_scientific: Archaeoglobus Fulgidus Dsm 4304 Organism_taxid: 224325 Gene: Af_1861 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Rna (32-Mer) Chain: I Engineered: Yes		Synthetic: Yes Organism_scientific: Pyrococcus Furiosus Com1 Organism_taxid: 1185654
Molecule: Dna (5'- D(Tpgpcptpcptpcpapgpcpcpgpcpapapgpgpapcp Aptpapcptpapcpapa)-3'); Chain: J Engineered: Yes Other_details: This Sequence Is Complementary To Entity 6		Synthetic: Yes Organism_scientific: Synthetic Organism_taxid: 32630 Other_details: This Sequence Is Complementary To Entity_id
symmetry	Space Group: P 1	R_factor 0.208 R_Free 0.246
crystal cell	length a length b length c angle alpha angle beta angle gamma 75.489 76.215 139.188 90.32 104.83 118.58
method	X-Ray Diffraction	resolution	2.10 Å
ligand	MG, ZN	enzyme
Gene	AF ; AF
Gene Ontology	Chain Function Process Component B F, G H, D, C, E
Primary reference	Crystal Structure of the CRISPR-Cas RNA Silencing Cmr Complex Bound to a Target Analog., Osawa T, Inanaga H, Sato C, Numata T, Mol Cell. 2015 May 7;58(3):418-30. doi: 10.1016/j.molcel.2015.03.018. Epub 2015, Apr 23. PMID:25921071

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (402 Kb) [Save to disk] Biological Unit Coordinates (3x1l.pdb1.gz) 393 Kb LPC: Ligand-Protein Contacts for 3X1L CSU: Contacts of Structural Units for 3X1L Structure Factors (1350 Kb) Retrieve 3X1L in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3X1L from S2C, [Save to disk] Re-refined 3x1l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3X1L in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3X1L

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3X1L, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3x1l_G] [3x1l_I] [3x1l_J] [3x1l_A] [3x1l_H] [3x1l_F] [3x1l_E] [3x1l] [3x1l_B] [3x1l_D] [3x1l_C] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3X1L

Community annotation for 3X1L at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---