3ZCF Electron Transport date Nov 20, 2012
title Structure Of Recombinant Human Cytochrome C
authors B.S.Rajagopal, J.A.R.Worrall, M.A.Hough
compound source
Molecule: Cytochrome C
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.172 R_Free 0.212
crystal
cell
length a length b length c angle alpha angle beta angle gamma
36.545 53.915 58.723 76.54 88.57 72.10
method X-Ray Diffractionresolution 1.65 Å
ligand HEC enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • protein serine/threonine pho...


    • Primary referenceThe hydrogen peroxide induced radical behaviour in human cytochrome c phospholipid complexes: Implications for the enhanced pro-apoptotic activity of the G41S mutant., Rajagopal BS, Edzuma AN, Hough MA, Blundell KL, Kagan VE, Kapralov AA, Fraser LA, Butt JN, Silkstone GG, Wilson MT, Svistunenko DA, Worrall JA, Biochem J. 2013 Oct 8. PMID:24099549
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk]
  • Biological Unit Coordinates (3zcf.pdb1.gz) 21 Kb
  • Biological Unit Coordinates (3zcf.pdb2.gz) 20 Kb
  • Biological Unit Coordinates (3zcf.pdb3.gz) 20 Kb
  • Biological Unit Coordinates (3zcf.pdb4.gz) 20 Kb
  • LPC: Ligand-Protein Contacts for 3ZCF
  • CSU: Contacts of Structural Units for 3ZCF
  • Structure Factors (1640 Kb)
  • Retrieve 3ZCF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ZCF from S2C, [Save to disk]
  • Re-refined 3zcf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3ZCF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3ZCF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ZCF, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3zcf_D] [3zcf] [3zcf_A] [3zcf_C] [3zcf_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3ZCF
  • Community annotation for 3ZCF at PDBWiki (http://pdbwiki.org)

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