3ZDL	Cell Adhesion	date	Nov 28, 2012
title	Vinculin Head (1-258) In Complex With A Riam Fragment
authors	T.Zacharchenko, P.R.Elliott, B.T.Goult, N.Bate, D.R.Critchely, I.L.Barsukov
compound		source
Molecule: Vinculin Chain: A Fragment: Vd1 Domain, Residues 1-259 Synonym: Metavinculin Engineered: Yes		Organism_scientific: Gallus Gallus Organism_common: Chicken Organism_taxid: 9031 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_vector: Pet15b
Molecule: Amyloid Beta A4 Precursor Protein-Binding Family 1-Interacting Protein; Chain: B Fragment: N Terminal Domain, Resiudes 1-32 Synonym: Apbb1-Interacting Protein 1, Proline-Rich Evh1 Lig Prel-1, Proline-Rich Protein 73, Rap1-Gtp-Interacting Adapt Molecule, Riam, Retinoic Acid-Responsive Proline-Rich Prote Rarp-1; Engineered: Yes Mutation: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 21 21 2	R_factor 0.188 R_Free 0.230
crystal cell	length a length b length c angle alpha angle beta angle gamma 51.730 70.030 95.600 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.30 Å
Gene Ontology	Chain Function Process Component A
Primary reference	RIAM and vinculin binding to talin are mutually exclusive and regulate adhesion assembly and turnover., Goult BT, Zacharchenko T, Bate N, Tsang R, Hey F, Gingras AR, Elliott PR, Roberts GC, Ballestrem C, Critchley DR, Barsukov IL, J Biol Chem. 2013 Feb 6. PMID:23389036

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk] Biological Unit Coordinates (3zdl.pdb1.gz) 90 Kb CSU: Contacts of Structural Units for 3ZDL Structure Factors (236 Kb) Retrieve 3ZDL in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3ZDL from S2C, [Save to disk] Re-refined 3zdl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3ZDL in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3ZDL

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3ZDL, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3zdl_A] [3zdl] [3zdl_B] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3ZDL

Community annotation for 3ZDL at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---