OCA Atlas for 3ZDS

3ZDS

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

FE, HMQ, HQ9, M8O, OMD, OXY, PO4

enzyme

Gene
Ontology

Chain	Function	Process	Component
F, G, A, I, H, K, B, E, D, C, J, L

Primary reference

Visualizing the substrate-, superoxo-, alkylperoxo-, and product-bound states at the nonheme Fe(II) site of homogentisate dioxygenase., Jeoung JH, Bommer M, Lin TY, Dobbek H, Proc Natl Acad Sci U S A. 2013 Jul 15. PMID:23858455

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1827 Kb) [Save to disk]

Biological Unit Coordinates (3zds.pdb1.gz) 921 Kb

Biological Unit Coordinates (3zds.pdb2.gz) 908 Kb

Biological Unit Coordinates (3zds.pdb3.gz) 908 Kb

Biological Unit Coordinates (3zds.pdb4.gz) 905 Kb

Biological Unit Coordinates (3zds.pdb5.gz) 909 Kb

LPC: Ligand-Protein Contacts for 3ZDS

CSU: Contacts of Structural Units for 3ZDS

Structure Factors (4112 Kb)

Retrieve 3ZDS in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3ZDS from S2C, [Save to disk]

Re-refined 3zds structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3ZDS in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3zds] [3zds_A] [3zds_B] [3zds_C] [3zds_D] [3zds_E] [3zds_F] [3zds_G] [3zds_H] [3zds_I] [3zds_J] [3zds_K] [3zds_L]

SWISS-PROT database:

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