3ZFW Hydrolase date Dec 12, 2012
title Crystal Structure Of The Tpr Domain Of Kinesin Light Chain In Complex With A Tryptophan-Acidic Cargo Peptide
authors S.Pernigo, A.Lamprecht, R.A.Steiner, M.P.Dodding
compound source
Molecule: Kinesin Light Chain 2
Chain: A, B
Fragment: Tpr Domain, Residues 218-477
Synonym: Klc 2
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet28

Molecule: Pleckstrin Homology Domain-Containing Family M Me
Chain: X, Y
Synonym: Ph Domain-Containing Family M Member 2, Salmonella Filaments A And Kinesin-Interacting Protein, Sifa And Kinesin-Interacting Protein;
Engineered: Yes
Other_details: Mol Id 1 And Mol Id 2 Are Expressed As A Sin Entity. It Is Unclear Which Of Chain A Or B Are Joined To Or Y.

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet28
symmetry Space Group: P 21 21 2
R_factor 0.2022 R_Free 0.2445
crystal
cell
length a length b length c angle alpha angle beta angle gamma
87.810 90.860 94.040 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural Basis For Kinesin-1:Cargo Recognition., Pernigo S, Lamprecht A, Steiner RA, Dodding MP, Science. 2013 Mar 21. PMID:23519214
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (171 Kb) [Save to disk]
  • Biological Unit Coordinates (3zfw.pdb1.gz) 82 Kb
  • Biological Unit Coordinates (3zfw.pdb2.gz) 81 Kb
  • CSU: Contacts of Structural Units for 3ZFW
  • Structure Factors (213 Kb)
  • Retrieve 3ZFW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ZFW from S2C, [Save to disk]
  • Re-refined 3zfw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ZFW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ZFW
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3ZFW, from MSDmotif at EBI
  • Fold representative 3zfw from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3zfw] [3zfw_A] [3zfw_Y] [3zfw_X] [3zfw_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3ZFW: [TPR ] by SMART
  • Other resources with information on 3ZFW
  • Community annotation for 3ZFW at PDBWiki (http://pdbwiki.org)

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