3ZID Gtp-Binding Protein date Jan 08, 2013
title Cetz From Methanosaeta Thermophila Strain Dsm 6194
authors C.H.S.Aylett, L.A.Amos, J.Lowe
compound source
Molecule: Tubulinftsz, Gtpase
Chain: A, B
Synonym: Cetz
Engineered: Yes
Other_details: C-Terminal Hexa-Histidine Tag
Organism_scientific: Methanosaeta Thermophila
Organism_taxid: 2224
Strain: Dsm 6194 Pt
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: C41
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
Other_details: Dsm
symmetry Space Group: P 1 21 1
R_factor 0.1821 R_Free 0.2290
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.547 107.011 76.966 90.00 91.42 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand GDP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCetZ tubulin-like proteins control archaeal cell shape., Duggin IG, Aylett CH, Walsh JC, Michie KA, Wang Q, Turnbull L, Dawson EM, Harry EJ, Whitchurch CB, Amos LA, Lowe J, Nature. 2014 Dec 22. doi: 10.1038/nature13983. PMID:25533961
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (242 Kb) [Save to disk]
  • Biological Unit Coordinates (3zid.pdb1.gz) 122 Kb
  • Biological Unit Coordinates (3zid.pdb2.gz) 117 Kb
  • LPC: Ligand-Protein Contacts for 3ZID
  • CSU: Contacts of Structural Units for 3ZID
  • Structure Factors (1421 Kb)
  • Retrieve 3ZID in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ZID from S2C, [Save to disk]
  • Re-refined 3zid structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ZID in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ZID
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ZID, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3zid] [3zid_B] [3zid_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3ZID: [Tubulin ] by SMART
  • Other resources with information on 3ZID
  • Community annotation for 3ZID at PDBWiki (http://pdbwiki.org)

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