3ZJC Hydrolase date Jan 17, 2013
title Crystal Structure Of Gmppnp-Bound Human Gimap7 L100q Variant
authors D.Schwefel, O.Daumke
compound source
Molecule: Gtpase Imap Family Member 7
Chain: A, B, C, D, E, F
Synonym: Gimap7, Immunity-Associated Nucleotide 7 Protein,
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_vector: Pgex6p1
symmetry Space Group: P 1
R_factor 0.2343 R_Free 0.3052
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.853 90.939 114.551 77.30 85.23 89.23
method X-Ray Diffractionresolution 3.15 Å
ligand GNP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceStructural Insights into the Mechanism of GTPase Activation in the GIMAP Family., Schwefel D, Arasu BS, Marino SF, Lamprecht B, Kochert K, Rosenbaum E, Eichhorst J, Wiesner B, Behlke J, Rocks O, Mathas S, Daumke O, Structure. 2013 Feb 27. pii: S0969-2126(13)00022-1. doi:, 10.1016/j.str.2013.01.014. PMID:23454188
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (542 Kb) [Save to disk]
  • Biological Unit Coordinates (3zjc.pdb1.gz) 100 Kb
  • Biological Unit Coordinates (3zjc.pdb2.gz) 90 Kb
  • Biological Unit Coordinates (3zjc.pdb3.gz) 102 Kb
  • Biological Unit Coordinates (3zjc.pdb4.gz) 89 Kb
  • Biological Unit Coordinates (3zjc.pdb5.gz) 78 Kb
  • Biological Unit Coordinates (3zjc.pdb6.gz) 91 Kb
  • LPC: Ligand-Protein Contacts for 3ZJC
  • CSU: Contacts of Structural Units for 3ZJC
  • Structure Factors (169 Kb)
  • Retrieve 3ZJC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ZJC from S2C, [Save to disk]
  • Re-refined 3zjc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ZJC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ZJC
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3ZJC, from MSDmotif at EBI
  • Fold representative 3zjc from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3zjc] [3zjc_D] [3zjc_E] [3zjc_B] [3zjc_A] [3zjc_F] [3zjc_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3ZJC
  • Community annotation for 3ZJC at PDBWiki (http://pdbwiki.org)

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