3ZKE	Contractile Protein Peptide	date	Jan 22, 2013
title	Structure Of Lc8 In Complex With Nek9 Peptide
authors	P.Gallego, A.Velazquez-Campoy, L.Regue, J.Roig, D.Reverter
compound		source
Molecule: Dynein Light Chain 1, Cytoplasmic Chain: A, C, E, G, I, K Synonym: Dynll-Lc8,8 Kda Dynein Light Chain, Dlc8, Dynein L Chain Lc8-Type 1, Protein Inhibitor Of Neuronal Nitric Oxi Synthase, Pin; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_vector: Pet28b
Molecule: Nek9 Protein Chain: B, D, F, H, J, L Synonym: Nek9		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_taxid: 9606
symmetry	Space Group: P 21 21 21	R_factor 0.19575 R_Free 0.22769
crystal cell	length a length b length c angle alpha angle beta angle gamma 39.984 105.124 133.899 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.20 Å
Gene Ontology	Chain Function Process Component A, C, K, I, G, E
Primary reference	Structural analysis of the regulation of the DYNLL/LC8 binding to Nek9 by phosphorylation., Gallego P, Velazquez-Campoy A, Regue L, Roig J, Reverter D, J Biol Chem. 2013 Mar 12. PMID:23482567

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (102 Kb) [Save to disk] Biological Unit Coordinates (3zke.pdb1.gz) 34 Kb Biological Unit Coordinates (3zke.pdb2.gz) 34 Kb Biological Unit Coordinates (3zke.pdb3.gz) 34 Kb CSU: Contacts of Structural Units for 3ZKE Structure Factors (374 Kb) Retrieve 3ZKE in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3ZKE from S2C, [Save to disk] Re-refined 3zke structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3ZKE in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3ZKE

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3ZKE, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3zke_I] [3zke_K] [3zke_F] [3zke_A] [3zke_H] [3zke_D] [3zke] [3zke_L] [3zke_E] [3zke_J] [3zke_B] [3zke_G] [3zke_C] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3ZKE: [Dynein_light ] by SMART

Other resources with information on 3ZKE

Community annotation for 3ZKE at PDBWiki (http://pdbwiki.org)

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