3ZKJ Transcription date Jan 23, 2013
title Crystal Structure Of Ankyrin Repeat And Socs Box-Containing (Asb9) In Complex With Elonginb And Elonginc
authors J.R.C.Muniz, K.Guo, Y.Zhang, V.Ayinampudi, P.Savitsky, T.Keates, P.Filippakopoulos, M.Vollmar, W.W.Yue, T.Krojer, E.Ugochukwu, F. Delft, S.Knapp, J.Weigelt, C.H.Arrowsmith, A.M.Edwards, C.Bountr A.N.Bullock
compound source
Molecule: Ankyrin Repeat And Socs Box Protein 9
Chain: A, D
Fragment: Residues 35-294
Synonym: Asb-9
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Kidney
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P11

Molecule: Transcription Elongation Factor B Polypeptide 1
Chain: B, E
Fragment: Residues 17-112
Synonym: Rna Polymerase II Transcription Factor, Eloc, Siii C, Siii P15, Elongin 15 Kda Subunit, Elongin-C;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Kidney
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P11

Molecule: Transcription Elongation Factor B Polypeptide 2
Chain: C, F
Fragment: Residues 221-338
Synonym: Rna Polymerase II Transcription Factor Siii Subuni P18, Elongin-B, Elob, Elongin 18 Kda Subunit;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Kidney
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P11
symmetry Space Group: P 21 2 21
R_factor 0.227 R_Free 0.265
crystal
cell
length a length b length c angle alpha angle beta angle gamma
102.860 110.740 113.410 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.58 Å
ligand CL, EDO, PEG enzyme
note 3ZKJ supersedes 2XAI
Gene
Ontology
ChainFunctionProcessComponent
A, D


E, B


F, C


Primary referenceMolecular Architecture of the Ankyrin SOCS Box Family of Cul5-Dependent E3 Ubiquitin Ligases., Muniz JR, Guo K, Kershaw NJ, Ayinampudi V, von Delft F, Babon JJ, Bullock AN, J Mol Biol. 2013 Jun 25. pii: S0022-2836(13)00394-X. doi:, 10.1016/j.jmb.2013.06.015. PMID:23806657
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (286 Kb) [Save to disk]
  • Biological Unit Coordinates (3zkj.pdb1.gz) 131 Kb
  • Biological Unit Coordinates (3zkj.pdb2.gz) 146 Kb
  • LPC: Ligand-Protein Contacts for 3ZKJ
  • CSU: Contacts of Structural Units for 3ZKJ
  • Structure Factors (1682 Kb)
  • Retrieve 3ZKJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ZKJ from S2C, [Save to disk]
  • Re-refined 3zkj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ZKJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ZKJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3ZKJ, from MSDmotif at EBI
  • Fold representative 3zkj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3zkj_B] [3zkj_F] [3zkj_C] [3zkj_D] [3zkj_E] [3zkj_A] [3zkj]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3ZKJ: [ANK] [SOCS] [SOCS_box] [Skp1] [UBQ ] by SMART
  • Other resources with information on 3ZKJ
  • Community annotation for 3ZKJ at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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