3ZLI	Oxidoreductase	date	Jan 31, 2013
title	Crystal Structure Of Jmjc Domain Of Human Histone Demethylas
authors	M.Vollmar, C.Gileadi, L.Shrestha, S.Goubin, C.Johansson, T.Krojer J.W.Raynor, A.Bradley, F.Von Delft, C.H.Arrowsmith, C.Bountra, A U.Oppermann
compound		source
Molecule: Histone Demethylase Uty Chain: A, B Fragment: Jmjc Domain, Residues 878-1347 Synonym: Ubiquitously-Transcribed Tpr Protein On The Y Chro Ubiquitously-Transcribed Y Chromosome Tetratricopeptide Rep Protein; Ec: 1.14.11.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pfb-Ct10hf-Lic
symmetry	Space Group: P 21 21 21	R_factor 0.176 R_Free 0.204
crystal cell	length a length b length c angle alpha angle beta angle gamma 90.585 110.249 118.242 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	AKG, EDO, FE2, ZN	enzyme	Oxidoreductase E.C.1.14.11 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Human UTY(KDM6C) is a male-specific N-methyl lysyl demethylase., Walport LJ, Hopkinson RJ, Vollmar M, Madden SK, Gileadi C, Oppermann U, Schofield CJ, Johansson C, J Biol Chem. 2014 Jun 27;289(26):18302-13. doi: 10.1074/jbc.M114.555052. Epub, 2014 May 5. PMID:24798337

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (305 Kb) [Save to disk] Biological Unit Coordinates (3zli.pdb1.gz) 151 Kb Biological Unit Coordinates (3zli.pdb2.gz) 151 Kb LPC: Ligand-Protein Contacts for 3ZLI CSU: Contacts of Structural Units for 3ZLI Structure Factors (3864 Kb) Retrieve 3ZLI in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3ZLI from S2C, [Save to disk] Re-refined 3zli structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3ZLI in 3D

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Visual 3D analysis of 3ZLI

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3ZLI, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3zli_A] [3zli_B] [3zli] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3ZLI: [JmjC ] by SMART

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