3ZMS Oxidoreductase Peptide date Feb 12, 2013
title Lsd1-Corest In Complex With Insm1 Peptide
authors M.Tortorici, M.T.Borrello, M.Tardugno, L.R.Chiarelli, S.Pilotto, G.Ciossani, N.A.Vellore, J.Cowan, M.O'Connell, A.Mai, R.Baron, A. A.Mattevi
compound source
Molecule: Lysine-Specific Histone Demethylase 1a
Chain: A
Synonym: Lds1, Braf35-Hdac Complex Protein Bhc110, Flavin-C Amine Oxidase Domain-Containing Protein 2;
Ec: 1.-.-.-
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21

Molecule: Rest Corepressor 1
Chain: B
Synonym: Protein Corest
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21

Molecule: Insulinoma-Associated Protein 1
Chain: C
Synonym: Zinc Finger Protein Ia-1, Insm1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
symmetry Space Group: I 2 2 2
R_factor 0.215 R_Free 0.227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
119.130 181.820 233.450 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.96 Å
ligand FAD enzyme Oxidoreductase E.C.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


C


Primary referencePROTEIN RECOGNITION BY SMALL PEPTIDE REVERSIBLE INHIBITORS OF THE CHROMATIN-MODIFYING LSD1/CoREST LYSINE DEMETHYLASE., Tortorici M, Borrello MT, Tardugno M, Chiarelli LR, Pilotto S, Ciossani G, Vellore NA, Bailey SG, Cowan J, O'Connell M, Crabb SJ, Packham GK, Mai A, Baron R, Ganesan A, Mattevi A, ACS Chem Biol. 2013 May 30. PMID:23721412
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (140 Kb) [Save to disk]
  • Biological Unit Coordinates (3zms.pdb1.gz) 130 Kb
  • LPC: Ligand-Protein Contacts for 3ZMS
  • CSU: Contacts of Structural Units for 3ZMS
  • Structure Factors (776 Kb)
  • Retrieve 3ZMS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ZMS from S2C, [Save to disk]
  • Re-refined 3zms structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3ZMS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3ZMS
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ZMS, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3zms_C] [3zms_A] [3zms_B] [3zms]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3ZMS: [ELM2] [SANT] [ZnF_C2H2 ] by SMART
    • Other resources with information on 3ZMS
  • Community annotation for 3ZMS at PDBWiki (http://pdbwiki.org)

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