3ZMT Oxidoreductase Peptide date Feb 12, 2013
title Lsd1-Corest In Complex With Prsflv Peptide
authors M.Tortorici, M.T.Borrello, M.Tardugno, L.R.Chiarelli, S.Pilotto, G.Ciossani, N.A.Vellore, J.Cowan, M.O'Connell, A.Mai, R.Baron, A. A.Mattevi
compound source
Molecule: Lysine-Specific Histone Demethylase 1a
Chain: A
Synonym: Lds1, Braf35-Hdac Complex Protein Bhc110, Flavin-Containing Amine Oxidase Domain-Containing Protein
Ec: 1.-.-.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21

Molecule: Rest Corepressor 1
Chain: B
Synonym: Protein Corest
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21

Molecule: Peptide
Chain: C
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
symmetry Space Group: I 2 2 2
R_factor 0.20275 R_Free 0.23015
crystal
cell
length a length b length c angle alpha angle beta angle gamma
119.500 180.760 234.110 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.10 Å
ligand FAD enzyme Oxidoreductase E.C.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B
  • RNA polymerase II transcript...
  • transcriptional repressor ac...


  • Primary referencePROTEIN RECOGNITION BY SMALL PEPTIDE REVERSIBLE INHIBITORS OF THE CHROMATIN-MODIFYING LSD1/CoREST LYSINE DEMETHYLASE., Tortorici M, Borrello MT, Tardugno M, Chiarelli LR, Pilotto S, Ciossani G, Vellore NA, Bailey SG, Cowan J, O'Connell M, Crabb SJ, Packham GK, Mai A, Baron R, Ganesan A, Mattevi A, ACS Chem Biol. 2013 May 30. PMID:23721412
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (140 Kb) [Save to disk]
  • Biological Unit Coordinates (3zmt.pdb1.gz) 132 Kb
  • LPC: Ligand-Protein Contacts for 3ZMT
  • CSU: Contacts of Structural Units for 3ZMT
  • Structure Factors (680 Kb)
  • Retrieve 3ZMT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ZMT from S2C, [Save to disk]
  • Re-refined 3zmt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ZMT in 3D
  • Proteopedia, because life has more than 2D.
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ZMT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3ZMT, from MSDmotif at EBI
  • Fold representative 3zmt from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3zmt_B] [3zmt_A] [3zmt] [3zmt_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3ZMT: [ELM2] [SANT ] by SMART
  • Other resources with information on 3ZMT
  • Community annotation for 3ZMT at PDBWiki (http://pdbwiki.org)

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