3ZNG Transcription date Feb 14, 2013
title Ankyrin Repeat And Socs-Box Protein 9 (Asb9) In Complex With And Elonginc
authors J.Thomas, I.Van Molle, A.Ciulli
compound source
Molecule: Ankyrin Repeat And Socs Box Protein 9
Chain: A, D
Fragment: Residues 35-294
Synonym: Asb-9, Asb9
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: Pnic

Molecule: Transcription Elongation Factor B Polypeptide 1
Chain: B, E
Fragment: Residues 17-112
Synonym: Elongin 15 Kda Subunit, Elongin-C, Eloc, Rna Polym Transcription Factor Siii Subunit C, Siii P15, Elonginc;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: Pcdf Duet

Molecule: Transcription Elongation Factor B Polypeptide 2
Chain: C, F
Synonym: Elongin 18 Kda Subunit, Elongin-B, Elob, Rna Polym Transcription Factor Siii Subunit B, Siii P18, Elonginb;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: Pcdf Duet
symmetry Space Group: P 21 21 2
R_factor 0.1946 R_Free 0.2416
crystal
cell
length a length b length c angle alpha angle beta angle gamma
114.110 103.130 109.900 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.85 Å
ligand EDO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D


E, B


F, C


Primary referenceMultimeric Complexes among Ankyrin-Repeat and SOCS-box Protein 9 (ASB9), ElonginBC, and Cullin 5: Insights into the Structure and Assembly of ECS-type Cullin-RING E3 Ubiquitin Ligases., Thomas JC, Matak-Vinkovic D, Van Molle I, Ciulli A, Biochemistry. 2013 Jul 25. PMID:23837592
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (290 Kb) [Save to disk]
  • Biological Unit Coordinates (3zng.pdb1.gz) 133 Kb
  • Biological Unit Coordinates (3zng.pdb2.gz) 147 Kb
  • LPC: Ligand-Protein Contacts for 3ZNG
  • CSU: Contacts of Structural Units for 3ZNG
  • Structure Factors (504 Kb)
  • Retrieve 3ZNG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ZNG from S2C, [Save to disk]
  • Re-refined 3zng structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ZNG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ZNG
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3ZNG, from MSDmotif at EBI
  • Fold representative 3zng from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3zng_C] [3zng_B] [3zng] [3zng_A] [3zng_E] [3zng_D] [3zng_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3ZNG: [ANK] [SOCS] [SOCS_box] [Skp1] [UBQ ] by SMART
  • Other resources with information on 3ZNG
  • Community annotation for 3ZNG at PDBWiki (http://pdbwiki.org)

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