OCA Atlas for 3ZNI

3ZNI

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

CA, EDO, PTR, ZN

enzyme

Gene
Ontology

Chain	Function	Process	Component
C, G, K, O
M, E, A, I

Primary reference

Essentiality of a non-RING element in priming donor ubiquitin for catalysis by a monomeric E3., Dou H, Buetow L, Sibbet GJ, Cameron K, Huang DT, Nat Struct Mol Biol. 2013 Jul 14. doi: 10.1038/nsmb.2621. PMID:23851457

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (850 Kb) [Save to disk]

Biological Unit Coordinates (3zni.pdb1.gz) 211 Kb

Biological Unit Coordinates (3zni.pdb2.gz) 213 Kb

Biological Unit Coordinates (3zni.pdb3.gz) 210 Kb

Biological Unit Coordinates (3zni.pdb4.gz) 213 Kb

LPC: Ligand-Protein Contacts for 3ZNI

CSU: Contacts of Structural Units for 3ZNI

Structure Factors (5227 Kb)

Retrieve 3ZNI in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3ZNI from S2C, [Save to disk]

Re-refined 3zni structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3ZNI in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3zni] [3zni_A] [3zni_B] [3zni_C] [3zni_D] [3zni_E] [3zni_F] [3zni_G] [3zni_H] [3zni_I] [3zni_J] [3zni_K] [3zni_L] [3zni_M] [3zni_N] [3zni_O] [3zni_P]

SWISS-PROT database:

Domains found in 3ZNI: [RING] [SH2] [UBCc] [UBQ ] by SMART

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]