3ZNU Lyase date Feb 18, 2013
title Crystal Structure Of Clcf In Crystal Form 2
authors C.Roth, J.A.D.Groening, S.R.Kaschabek, M.Schloemann, N.Straeter
compound source
Molecule: 5-Chloromuconolactone Dehalogenase
Chain: A, B, C, D, E, F, G, H, I, J
Synonym: Clcf
Engineered: Yes
Organism_scientific: Rhodococcus Opacus
Organism_taxid: 37919
Strain: 1cp
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.157 R_Free 0.191
crystal
cell
length a length b length c angle alpha angle beta angle gamma
78.242 103.574 141.667 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.65 Å
ligand CL, EDO, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, E, B, H, C, D, I, G


Primary referenceCrystal structure and catalytic mechanism of chloromuconolactone dehalogenase ClcF from Rhodococcus opacus 1CP., Roth C, Janosch AD, Kaschabek SR, Schlomann M, Strater N, Mol Microbiol. 2013 Feb 20. doi: 10.1111/mmi.12182. PMID:23421784
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (507 Kb) [Save to disk]
  • Biological Unit Coordinates (3znu.pdb1.gz) 493 Kb
  • LPC: Ligand-Protein Contacts for 3ZNU
  • CSU: Contacts of Structural Units for 3ZNU
  • Structure Factors (1656 Kb)
  • Retrieve 3ZNU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ZNU from S2C, [Save to disk]
  • Re-refined 3znu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ZNU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ZNU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ZNU, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3znu_H] [3znu_I] [3znu_A] [3znu_C] [3znu_G] [3znu_D] [3znu_J] [3znu_B] [3znu_F] [3znu_E] [3znu]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3ZNU
  • Community annotation for 3ZNU at PDBWiki (http://pdbwiki.org)

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