3ZOO Oxidoreductase date Feb 22, 2013
title Structure Of The Y46f Mutant Of Human Cytochrome C
authors B.S.Rajagopal, J.A.R.Worrall, M.A.Hough
compound source
Molecule: Cytochrome C
Chain: A, B, C, D
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.138 R_Free 0.179
crystal
cell
length a length b length c angle alpha angle beta angle gamma
36.367 53.952 58.950 76.55 88.73 71.86
method X-Ray Diffractionresolution 1.35 Å
ligand HEC, PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • protein serine/threonine pho...


  • Primary referenceThe hydrogen peroxide induced radical behaviour in human cytochrome c phospholipid complexes: Implications for the enhanced pro-apoptotic activity of the G41S mutant., Rajagopal BS, Edzuma AN, Hough MA, Blundell KL, Kagan VE, Kapralov AA, Fraser LA, Butt JN, Silkstone GG, Wilson MT, Svistunenko DA, Worrall JA, Biochem J. 2013 Oct 8. PMID:24099549
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (166 Kb) [Save to disk]
  • Biological Unit Coordinates (3zoo.pdb1.gz) 43 Kb
  • Biological Unit Coordinates (3zoo.pdb2.gz) 40 Kb
  • Biological Unit Coordinates (3zoo.pdb3.gz) 42 Kb
  • Biological Unit Coordinates (3zoo.pdb4.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 3ZOO
  • CSU: Contacts of Structural Units for 3ZOO
  • Structure Factors (3190 Kb)
  • Retrieve 3ZOO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ZOO from S2C, [Save to disk]
  • Re-refined 3zoo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ZOO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ZOO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ZOO, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3zoo_B] [3zoo_C] [3zoo] [3zoo_A] [3zoo_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3ZOO
  • Community annotation for 3ZOO at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science