3ZOP Isomerase date Feb 22, 2013
title Arg90cit Chorismate Mutase Of Bacillus Subtilis At 1.6 A Res
authors D.Burschowsky, A.Vaneerde, M.Okvist, A.Kienhofer, P.Kast, D.Hilve U.Krengel
compound source
Molecule: Chorismate Mutase Aroh
Chain: A, B, C, D, E, F
Synonym: Cm
Ec: 5.4.99.5
Engineered: Yes
Mutation: Yes
Organism_scientific: Bacillus Subtilis
Organism_taxid: 1423
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.169 R_Free 0.221
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.134 51.131 69.906 97.84 92.97 101.26
method X-Ray Diffractionresolution 1.61 Å
ligand CIR enzyme Isomerase E.C.5.4.99.5 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceElectrostatic transition state stabilization rather than reactant destabilization provides the chemical basis for efficient chorismate mutase catalysis., Burschowsky D, van Eerde A, Okvist M, Kienhofer A, Kast P, Hilvert D, Krengel U, Proc Natl Acad Sci U S A. 2014 Nov 24. pii: 201408512. PMID:25422475
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (257 Kb) [Save to disk]
  • Biological Unit Coordinates (3zop.pdb1.gz) 127 Kb
  • Biological Unit Coordinates (3zop.pdb2.gz) 127 Kb
  • LPC: Ligand-Protein Contacts for 3ZOP
  • CSU: Contacts of Structural Units for 3ZOP
  • Structure Factors (1153 Kb)
  • Retrieve 3ZOP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ZOP from S2C, [Save to disk]
  • Re-refined 3zop structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ZOP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ZOP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ZOP, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3zop_D] [3zop_A] [3zop_C] [3zop_F] [3zop] [3zop_E] [3zop_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3ZOP
  • Community annotation for 3ZOP at PDBWiki (http://pdbwiki.org)

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