3ZOS Transferase date Feb 22, 2013
title Structure Of The Ddr1 Kinase Domain In Complex With Ponatini
authors P.Canning, J.M.Elkins, S.Goubin, P.Mahajan, A.Bradley, D.Coutandi F.Von Delft, C.H.Arrowsmith, A.M.Edwards, C.Bountra, A.Bullock
compound source
Molecule: Epithelial Discoidin Domain-Containing Receptor 1
Chain: A, B
Fragment: Kinase Domain, Residues 601-913
Synonym: Epithelial Discoidin Domain Receptor, Cd167 Antige Family Member A, Cell Adhesion Kinase, Discoidin Receptor Kinase, Hgk2, Mammary Carcinoma Kinase 10, Mck-10, Protein-Tyrosine Kinase 3a, Protein-Tyrosine Kinase Rtk-6, Tyrosine Kinase Ddr, Tyrosine-Protein Kinase Cak, Cd167a;
Ec: 2.7.10.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfb-Lic-Bse
Other_details: Mammalian Gene Collection (Mgc)
symmetry Space Group: P 1 21 1
R_factor 0.20613 R_Free 0.23416
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.951 61.733 80.193 90.00 104.40 90.00
method X-Ray Diffractionresolution 1.92 Å
ligand 0LI, EDO enzyme Transferase E.C.2.7.10.1 BRENDA
Primary referenceStructural mechanisms determining inhibition of the collagen receptor DDR1 by selective and multi-targeted type II kinase inhibitors., Canning P, Tan L, Chu K, Lee SW, Gray NS, Bullock AN, J Mol Biol. 2014 Apr 22. pii: S0022-2836(14)00198-3. doi:, 10.1016/j.jmb.2014.04.014. PMID:24768818
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (213 Kb) [Save to disk]
  • Biological Unit Coordinates (3zos.pdb1.gz) 105 Kb
  • Biological Unit Coordinates (3zos.pdb2.gz) 104 Kb
  • LPC: Ligand-Protein Contacts for 3ZOS
  • CSU: Contacts of Structural Units for 3ZOS
  • Structure Factors (1788 Kb)
  • Retrieve 3ZOS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ZOS from S2C, [Save to disk]
  • Re-refined 3zos structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ZOS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ZOS
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3ZOS, from MSDmotif at EBI
  • Fold representative 3zos from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3zos_A] [3zos_B] [3zos]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3ZOS: [TyrKc ] by SMART
  • Alignments of the sequence of 3ZOS with the sequences similar proteins can be viewed for 3ZOS's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3ZOS
  • Community annotation for 3ZOS at PDBWiki (http://pdbwiki.org)

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