3ZP5 Transcription Dna date Feb 26, 2013
title Crystal Structure Of The Dna Binding Ets Domain Of The Human Fev In Complex With Dna
authors J.A.Newman, C.D.O.Cooper, T.Krojer, L.Shrestha, C.K.Allerston, M. C.H.Arrowsmith, N.Burgess-Brown, A.Edwards, F.Von Delft, O.Gile
compound source
Molecule: Protein Fev
Chain: A
Fragment: Ets Domain, Residues 42-141
Synonym: Fifth Ewing Variant Protein, Pc12 Ets Domain-Conta Transcription Factor 1, Pc12 Ets Factor 1, Pet-1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 5'-D(Cpapcptptpcpcpgpgptp)-3'
Chain: C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: 5'-D(Apcpcpgpgpapapgptpgp)-3'
Chain: G
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: C 2 2 21
R_factor 0.210 R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.224 64.554 110.214 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructures of the Ets Domains of Transcription Factors ETV1, ETV4, ETV5 and FEV: Determinants of DNA Binding and Redox Regulation by Disulfide bond formation., Cooper CD, Newman JA, Aitkenhead H, Allerston CK, Gileadi O, J Biol Chem. 2015 Apr 12. pii: jbc.M115.646737. PMID:25866208
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (3zp5.pdb1.gz) 50 Kb
  • CSU: Contacts of Structural Units for 3ZP5
  • Structure Factors (163 Kb)
  • Retrieve 3ZP5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ZP5 from S2C, [Save to disk]
  • Re-refined 3zp5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ZP5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ZP5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ZP5, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3zp5_C] [3zp5_A] [3zp5] [3zp5_G]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3ZP5: [ETS ] by SMART
  • Other resources with information on 3ZP5
  • Community annotation for 3ZP5 at PDBWiki (http://pdbwiki.org)

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