3ZPL Crystal structure of Sco3205, a MarR family transcriptional regulator from Streptomyces coelicolor, in complex with DNA date
authors Stevenson, C.E.M., Assaad, A., Lawson, D.M.
compound source
symmetry
R_factor
R_Free 0.19649
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.80
ligand PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B


Primary referenceInvestigation of DNA sequence recognition by a streptomycete MarR family transcriptional regulator through surface plasmon resonance and X-ray crystallography., Stevenson CE, Assaad A, Chandra G, Le TB, Greive SJ, Bibb MJ, Lawson DM, Nucleic Acids Res. 2013 Jun 7. PMID:23748564
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (293 Kb) [Save to disk]
  • Biological Unit Coordinates (3zpl.pdb1.gz) 141 Kb
  • Biological Unit Coordinates (3zpl.pdb2.gz) 141 Kb
  • LPC: Ligand-Protein Contacts for 3ZPL
  • CSU: Contacts of Structural Units for 3ZPL
  • Structure Factors (1439 Kb)
  • Retrieve 3ZPL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ZPL from S2C, [Save to disk]
  • Re-refined 3zpl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ZPL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ZPL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3ZPL, from MSDmotif at EBI
  • Fold representative 3zpl from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3zpl_G] [3zpl_A] [3zpl_C] [3zpl] [3zpl_B] [3zpl_F] [3zpl_D] [3zpl_E] [3zpl_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3ZPL: [HTH_MARR ] by SMART
  • Other resources with information on 3ZPL
  • Community annotation for 3ZPL at PDBWiki (http://pdbwiki.org)

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