3ZQS Ligase date Jun 10, 2011
title Human Fancl Central Domain
authors C.Hodson, A.R.Cole, A.Purkiss-Trew, H.Walden
compound source
Molecule: E3 Ubiquitin-Protein Ligase Fancl
Chain: A, B
Fragment: Urd, Residues 109-294
Synonym: Fancl, Fanconi Anemia Group L Protein, Fanconi Anemia-Associated Polypeptide Of 43 Kda, Faap43;
Ec: 6.3.2.19
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet28b
symmetry Space Group: C 1 2 1
R_factor 0.1833 R_Free 0.2066
crystal
cell
length a length b length c angle alpha angle beta angle gamma
147.600 102.520 65.760 90.00 94.09 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand NA, P6G, PRO enzyme Ligase E.C.6.3.2.19 BRENDA
Primary referenceStructural analysis of human FANCL, the E3 ligase in the fanconi anemia pathway., Hodson C, Cole AR, Lewis LP, Miles JA, Purkiss-Trew A, Walden H, J Biol Chem. 2011 Jul 20. PMID:21775430
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (144 Kb) [Save to disk]
  • Biological Unit Coordinates (3zqs.pdb1.gz) 274 Kb
  • LPC: Ligand-Protein Contacts for 3ZQS
  • CSU: Contacts of Structural Units for 3ZQS
  • Structure Factors (733 Kb)
  • Retrieve 3ZQS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ZQS from S2C, [Save to disk]
  • Re-refined 3zqs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ZQS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ZQS
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3ZQS, from MSDmotif at EBI
  • Fold representative 3zqs from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3zqs_B] [3zqs] [3zqs_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3ZQS
  • Community annotation for 3ZQS at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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