3ZR0 Hydrolase date Jun 13, 2011
title Crystal Structure Of Human Mth1 In Complex With 8-Oxo-Dgmp
authors L.M.Svensson, A.Jemth, M.Desroses, O.Loseva, T.Helleday, M.Hogbom P.Stenmark
compound source
Molecule: 7,8-Dihydro-8-Oxoguanine Triphosphatase
Chain: A, B
Synonym: Mth1,8-Oxo-Dgtpase, Nucleoside Diphosphate-Linked Motif 1, Nudix Motif 1;
Ec: 3.6.1.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nudt1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet28a
symmetry Space Group: P 21 21 21
R_factor 0.196 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.500 67.240 79.990 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand 8OG, SO4 enzyme Hydrolase E.C.3.6.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of human MTH1 and the 8-oxo-dGMP product complex., Svensson LM, Jemth AS, Desroses M, Loseva O, Helleday T, Hogbom M, Stenmark P, FEBS Lett. 2011 Aug 19;585(16):2617-21. Epub 2011 Jul 23. PMID:21787772
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (116 Kb) [Save to disk]
  • Biological Unit Coordinates (3zr0.pdb1.gz) 57 Kb
  • Biological Unit Coordinates (3zr0.pdb2.gz) 55 Kb
  • LPC: Ligand-Protein Contacts for 3ZR0
  • CSU: Contacts of Structural Units for 3ZR0
  • Structure Factors (398 Kb)
  • Retrieve 3ZR0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ZR0 from S2C, [Save to disk]
  • Re-refined 3zr0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ZR0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ZR0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ZR0, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3zr0_B] [3zr0_A] [3zr0]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3ZR0
  • Community annotation for 3ZR0 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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