3ZRC	Transcription	date	Jun 15, 2011
title	Pvhl54-213-Elob-Eloc Complex (4r)-4-Hydroxy-1-[(3-Methylisox Yl)Acetyl]-N-[4-(1,3-Oxazol-5-Yl)Benzyl]-L-Prolinamide Boun
authors	I.Van Molle, D.L.Buckley, C.M.Crews, A.Ciulli
compound		source
Molecule: Transcription Elongation Factor B Polypeptide 2 Chain: A, D, G, J Synonym: Elongin 18 Kda Subunit, Elongin-B, Elob, Rna Polym Transcription Factor Siii Subunit B, Siii P18, Elonginb; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_vector: Pcdf-Duet1
Molecule: Transcription Elongation Factor B Polypeptide 1 Chain: B, E, H, K Fragment: 17-112 Synonym: Elongin 15 Kda Subunit, Elongin-C, Eloc, Rna Polym Transcription Factor Siii Subunit C, Siii P15, Elonginc; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_vector: Pcdf-Duet1
Molecule: Von Hippel-Lindau Disease Tumor Suppressor Chain: C, F, I, L Fragment: Residues 54-213 Synonym: Protein G7, Pvhl Engineered: Yes		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_vector: Pet28a
symmetry	Space Group: P 41 2 2	R_factor 0.242 R_Free 0.350
crystal cell	length a length b length c angle alpha angle beta angle gamma 93.741 93.741 363.184 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.90 Å
ligand	L8B	enzyme
Gene Ontology	Chain Function Process Component A, J, D, G H, K, E, B
Primary reference	Targeting the von Hippel-Lindau E3 Ubiquitin Ligase Using Small Molecules To Disrupt the VHL/HIF-1alpha Interaction., Buckley DL, Van Molle I, Gareiss PC, Tae HS, Michel J, Noblin DJ, Jorgensen WL, Ciulli A, Crews CM, J Am Chem Soc. 2012 Mar 14;134(10):4465-8. Epub 2012 Feb 27. PMID:22369643

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (213 Kb) [Save to disk] Biological Unit Coordinates (3zrc.pdb1.gz) 52 Kb Biological Unit Coordinates (3zrc.pdb2.gz) 53 Kb Biological Unit Coordinates (3zrc.pdb3.gz) 55 Kb Biological Unit Coordinates (3zrc.pdb4.gz) 55 Kb LPC: Ligand-Protein Contacts for 3ZRC CSU: Contacts of Structural Units for 3ZRC Structure Factors (488 Kb) Retrieve 3ZRC in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3ZRC from S2C, [Save to disk] Re-refined 3zrc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3ZRC in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3ZRC

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3ZRC, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3zrc] [3zrc_J] [3zrc_E] [3zrc_C] [3zrc_D] [3zrc_G] [3zrc_B] [3zrc_L] [3zrc_A] [3zrc_H] [3zrc_F] [3zrc_K] [3zrc_I] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3ZRC: [Skp1] [UBQ ] by SMART

Other resources with information on 3ZRC

Community annotation for 3ZRC at PDBWiki (http://pdbwiki.org)

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