OCA Atlas for 3ZRC

3ZRC

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

L8B

enzyme

Gene
Ontology

Chain	Function	Process	Component
G, D, J, A
H, K, B, E

Primary reference

Targeting the von Hippel-Lindau E3 Ubiquitin Ligase Using Small Molecules To Disrupt the VHL/HIF-1alpha Interaction., Buckley DL, Van Molle I, Gareiss PC, Tae HS, Michel J, Noblin DJ, Jorgensen WL, Ciulli A, Crews CM, J Am Chem Soc. 2012 Mar 14;134(10):4465-8. Epub 2012 Feb 27. PMID:22369643

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (213 Kb) [Save to disk]

Biological Unit Coordinates (3zrc.pdb1.gz) 52 Kb

Biological Unit Coordinates (3zrc.pdb2.gz) 53 Kb

Biological Unit Coordinates (3zrc.pdb3.gz) 55 Kb

Biological Unit Coordinates (3zrc.pdb4.gz) 55 Kb

LPC: Ligand-Protein Contacts for 3ZRC

CSU: Contacts of Structural Units for 3ZRC

Structure Factors (488 Kb)

Retrieve 3ZRC in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3ZRC from S2C, [Save to disk]

Re-refined 3zrc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3ZRC in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3zrc] [3zrc_A] [3zrc_B] [3zrc_C] [3zrc_D] [3zrc_E] [3zrc_F] [3zrc_G] [3zrc_H] [3zrc_I] [3zrc_J] [3zrc_K] [3zrc_L]

SWISS-PROT database:

Domains found in 3ZRC: [Skp1] [UBQ ] by SMART

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