3ZSH Transferase date Jun 28, 2011
title X-Ray Structure Of P38alpha Bound To Scio-469
authors R.Azevedo, M.Van Zeeland, H.Raaijmakers, B.Kazemier, A.Oubrie
compound source
Molecule: Mitogen-Activated Protein Kinase 14
Chain: A
Synonym: Map Kinase 14, Mapk 14, Cytokine Suppressive Anti- Inflammatory Drug-Binding Protein, Csaid-Binding Protein, C Kinase Mxi2, Max-Interacting Protein 2, Mitogen-Activated P Kinase P38 Alpha, Map Kinase P38 Alpha, Sapk2a, P38a;
Ec: 2.7.11.24
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Rosetta
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmal-C2x Like
symmetry Space Group: P 21 21 21
R_factor 0.205 R_Free 0.255
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.720 70.080 74.290 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.05 Å
ligand 469, BOG BindingDB enzyme Transferase E.C.2.7.11.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceX-ray structure of p38alpha bound to TAK-715: comparison with three classic inhibitors., Azevedo R, van Zeeland M, Raaijmakers H, Kazemier B, de Vlieg J, Oubrie A, Acta Crystallogr D Biol Crystallogr. 2012 Aug;68(Pt 8):1041-50. Epub 2012 Jul 17. PMID:22868770
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (119 Kb) [Save to disk]
  • Biological Unit Coordinates (3zsh.pdb1.gz) 112 Kb
  • LPC: Ligand-Protein Contacts for 3ZSH
  • CSU: Contacts of Structural Units for 3ZSH
  • Structure Factors (295 Kb)
  • Retrieve 3ZSH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ZSH from S2C, [Save to disk]
  • Re-refined 3zsh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ZSH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ZSH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ZSH, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3zsh] [3zsh_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3ZSH: [S_TKc ] by SMART
  • Other resources with information on 3ZSH
  • Community annotation for 3ZSH at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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