3ZSJ Sugar Binding Protein date Jun 28, 2011
title Crystal Structure Of Human Galectin-3 Crd In Complex With La 0.86 Angstrom Resolution
authors K.Saraboji, M.Hakansson, C.Diehl, U.J.Nilsson, H.Leffler, M.Akke,
compound source
Molecule: Galectin-3
Chain: A
Fragment: Carbohydrate Recognition Domain, Residues 113-250
Synonym: Gal-3,35 Kda Lectin, Carbohydrate-Binding Protein 35, Galactose-Specific Lectin 3, Galactoside-Binding Protei Ige-Binding Protein, L-31, Laminin-Binding Protein, Lectin Antigen;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
35.750 58.300 63.080 90.00 90.00 90.00
method X-Ray Diffractionresolution 0.86 Å
ligand BGC, GAL BindingDB enzyme
note 3ZSJ is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe carbohydrate-binding site in galectin-3 is pre-organized to recognize a sugar-like framework of oxygens: ultra-high resolution structures and water dynamics., Saraboji K, Hakansson M, Genheden S, Diehl C, Qvist J, Weininger U, Nilsson UJ, Leffler H, Ryde U, Akke M, Logan DT, Biochemistry. 2011 Nov 23. PMID:22111949
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk]
  • Biological Unit Coordinates (3zsj.pdb1.gz) 62 Kb
  • LPC: Ligand-Protein Contacts for 3ZSJ
  • CSU: Contacts of Structural Units for 3ZSJ
  • Structure Factors (1005 Kb)
  • Retrieve 3ZSJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ZSJ from S2C, [Save to disk]
  • Re-refined 3zsj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ZSJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ZSJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ZSJ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3zsj] [3zsj_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3ZSJ: [GLECT] [Gal-bind_lectin ] by SMART
  • Other resources with information on 3ZSJ
  • Community annotation for 3ZSJ at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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