OCA Atlas for 3ZTD

3ZTD

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

ZTD

enzyme

Gene
Ontology

Chain	Function	Process	Component
J, D, A, G
K, H, B, E

Primary reference

Dissecting fragment-based lead discovery at the von hippel-lindau protein:hypoxia inducible factor 1alpha protein-protein interface., Van Molle I, Thomann A, Buckley DL, So EC, Lang S, Crews CM, Ciulli A, Chem Biol. 2012 Oct 26;19(10):1300-12. doi: 10.1016/j.chembiol.2012.08.015. PMID:23102223

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (215 Kb) [Save to disk]

Biological Unit Coordinates (3ztd.pdb1.gz) 54 Kb

Biological Unit Coordinates (3ztd.pdb2.gz) 54 Kb

Biological Unit Coordinates (3ztd.pdb3.gz) 54 Kb

Biological Unit Coordinates (3ztd.pdb4.gz) 56 Kb

LPC: Ligand-Protein Contacts for 3ZTD

CSU: Contacts of Structural Units for 3ZTD

Structure Factors (586 Kb)

Retrieve 3ZTD in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3ZTD from S2C, [Save to disk]

Re-refined 3ztd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3ZTD in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3ztd] [3ztd_A] [3ztd_B] [3ztd_C] [3ztd_D] [3ztd_E] [3ztd_F] [3ztd_G] [3ztd_H] [3ztd_I] [3ztd_J] [3ztd_K] [3ztd_L]

SWISS-PROT database:

Domains found in 3ZTD: [Skp1] [UBQ ] by SMART

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