3ZTG Ligase date Jul 07, 2011
title Solution Structure Of The Ring Finger-Like Domain Of Retinob Binding Protein-6 (Rbbp6)
authors M.A.Kappo, E.Ab, R.A.Atkinson, A.Faro, V.Muleya, T.Mulaudzi, J.O.P J.M.Mckenzie, D.J.R.Pugh
compound source
Molecule: E3 Ubiquitin-Protein Ligase Rbbp6
Chain: A, B
Fragment: Ring Finger-Like Domain, Residues 249-335
Synonym: Retinoblastoma Binding Protein-6, Proliferation Po Related Protein, Protein P2p-R, Retinoblastoma-Binding Q Pr Rbq-1, Retinoblastoma-Binding Protein 6, P53-Associated Cel Protein Of Testis;
Ec: 6.3.2.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_vector: Pgex-6p-2
methodSolution NMR
ligand ZN enzyme Ligase E.C.6.3.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceSolution Structure of RING Finger-like Domain of Retinoblastoma-binding Protein-6 (RBBP6) Suggests It Functions as a U-box., Kappo MA, Ab E, Hassem F, Atkinson RA, Faro A, Muleya V, Mulaudzi T, Poole JO, McKenzie JM, Chibi M, Moolman-Smook JC, Rees DJ, Pugh DJ, J Biol Chem. 2012 Mar 2;287(10):7146-58. Epub 2011 Nov 29. PMID:22130672
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1390 Kb) [Save to disk]
  • Biological Unit Coordinates (3ztg.pdb1.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 3ZTG
  • CSU: Contacts of Structural Units for 3ZTG
  • Original NMR restraints for 3ZTG from PDB
  • Retrieve 3ZTG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ZTG from S2C, [Save to disk]
  • View 3ZTG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ZTG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ZTG, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ztg_B] [3ztg_A] [3ztg]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3ZTG: [RING ] by SMART
  • Other resources with information on 3ZTG
  • Community annotation for 3ZTG at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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