3ZU1 Hormone date Jul 13, 2011
title Structure Of Lysb29(Nepsilon Omega-Carboxyheptadecanoyl) Des Human Insulin
authors G.Schluckebier, J.Whittingham
compound source
Molecule: Insulin A Chain
Chain: A, C
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast

Molecule: Insulin B Chain
Chain: B, D
Engineered: Yes
Other_details: Lys B29, D29 Chemically Modified With Carbox Heptadecanoylic Acid

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
symmetry Space Group: H 3
R_factor 0.165 R_Free 0.214
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.060 79.060 41.020 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.60 Å
ligand CL, RCO, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • protease binding
  • insulin receptor binding
  • insulin-like growth factor r...
  • hormone activity
  • protein binding
  • MAPK cascade
  • negative regulation of acute...
  • carbohydrate metabolic proce...
  • glucose metabolic process
  • energy reserve metabolic pro...
  • regulation of transcription,...
  • regulation of cellular amino...
  • acute-phase response
  • G-protein coupled receptor s...
  • cell-cell signaling
  • positive regulation of cell ...
  • insulin receptor signaling p...
  • positive regulation of phosp...
  • glucose transport
  • regulation of transmembrane ...
  • positive regulation of cell ...
  • positive regulation of cell ...
  • endocrine pancreas developme...
  • positive regulation of prote...
  • activation of protein kinase...
  • positive regulation of cellu...
  • negative regulation of prote...
  • regulation of protein locali...
  • negative regulation of NAD(P...
  • wound healing
  • negative regulation of prote...
  • glucose homeostasis
  • negative regulation of apopt...
  • positive regulation of MAPK ...
  • cellular protein metabolic p...
  • small molecule metabolic pro...
  • positive regulation of nitri...
  • positive regulation of cell ...
  • negative regulation of gluco...
  • positive regulation of glyco...
  • positive regulation of DNA r...
  • negative regulation of glyco...
  • positive regulation of glyco...
  • positive regulation of mitos...
  • negative regulation of prote...
  • negative regulation of vasod...
  • positive regulation of vasod...
  • negative regulation of fatty...
  • positive regulation of gluco...
  • positive regulation of insul...
  • alpha-beta T cell activation...
  • positive regulation of lipid...
  • regulation of protein secret...
  • negative regulation of prote...
  • positive regulation of cytok...
  • positive regulation of pepti...
  • regulation of insulin secret...
  • negative regulation of lipid...
  • positive regulation of nitri...
  • positive regulation of NF-ka...
  • positive regulation of prote...
  • fatty acid homeostasis
  • negative regulation of respi...
  • positive regulation of respi...
  • positive regulation of pepti...
  • positive regulation of brown...
  • negative regulation of feedi...
  • extracellular region
  • extracellular space
  • endoplasmic reticulum lumen
  • Golgi lumen
  • endosome lumen
  • secretory granule lumen
  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk]
  • Biological Unit Coordinates (3zu1.pdb1.gz) 208 Kb
  • LPC: Ligand-Protein Contacts for 3ZU1
  • CSU: Contacts of Structural Units for 3ZU1
  • Structure Factors (142 Kb)
  • Retrieve 3ZU1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ZU1 from S2C, [Save to disk]
  • Re-refined 3zu1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ZU1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • On AstexViewer, from MSD-EBI (viewer documentation).
  • On RasMol (Install RasMol freeware) Here's help on how to use RasMol.
  • Visual 3D analysis of 3ZU1
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3ZU1, from MSDmotif at EBI
  • Fold representative 3zu1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3zu1_A] [3zu1_B] [3zu1_C] [3zu1_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 3ZU1 with the sequences similar proteins can be viewed for 3ZU1's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3ZU1
  • Community annotation for 3ZU1 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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