3ZUJ Fluorescent Protein date Jul 19, 2011
title Padron On (Fluorescent) Abcis
authors A.Regis Faro, P.Carpentier, D.Bourgeois
compound source
Molecule: Fluorescent Protein Dronpa
Chain: A, B, C, D, E, F
Fragment: Residues 2-217
Synonym: Padron
Engineered: Yes
 Organism_scientific: Echinophyllia Sp. Sc22
Organism_taxid: 301887
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_vector: Prset
symmetry Space Group: P 21 21 2
R_factor 0.189 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
109.580 181.560 72.820 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.35 Å
ligand GYC enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceLow-temperature chromophore isomerization reveals the photoswitching mechanism of the fluorescent protein padron., Regis Faro A, Carpentier P, Jonasson G, Pompidor G, Arcizet D, Demachy I, Bourgeois D, J Am Chem Soc. 2011 Oct 19;133(41):16362-5. Epub 2011 Sep 22. PMID:21923132
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (230 Kb) [Save to disk]
  • Biological Unit Coordinates (3zuj.pdb1.gz) 40 Kb
  • Biological Unit Coordinates (3zuj.pdb2.gz) 40 Kb
  • Biological Unit Coordinates (3zuj.pdb3.gz) 40 Kb
  • Biological Unit Coordinates (3zuj.pdb4.gz) 40 Kb
  • Biological Unit Coordinates (3zuj.pdb5.gz) 39 Kb
  • Biological Unit Coordinates (3zuj.pdb6.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 3ZUJ
  • CSU: Contacts of Structural Units for 3ZUJ
  • Structure Factors (1146 Kb)
  • Retrieve 3ZUJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ZUJ from S2C, [Save to disk]
  • Re-refined 3zuj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3ZUJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3ZUJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ZUJ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3zuj_E] [3zuj_B] [3zuj_F] [3zuj] [3zuj_C] [3zuj_D] [3zuj_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3ZUJ
  • Community annotation for 3ZUJ at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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