3ZVZ	Ligase	date	Jul 28, 2011
title	Phd Finger Of Human Uhrf1
authors	N.Lallous, C.Birck, A.G.Mc Ewen, P.Legrand, J.P.Samama
compound		source
Molecule: E3 Ubiquitin-Protein Ligase Uhrf1 Chain: B Fragment: Phd Finger, Residues 314-367 Synonym: Inverted Ccaat Box-Binding Protein Of 90 Kda, Nucl Protein 95, Nuclear Zinc Finger Protein Np95, Hunp95, Ring Protein 106, Transcription Factor Icbp90, Ubiquitin-Like P Ring Finger Domain-Containing Protein 1, Ubiquitin-Like-Co Phd And Ring Finger Domains Protein 1; Ec: 6.3.2.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_variant: Rosetta 2 Expression_system_vector: Phggwa
symmetry	Space Group: P 65 2 2	R_factor 0.1690 R_Free 0.1972
crystal cell	length a length b length c angle alpha angle beta angle gamma 51.006 51.006 83.629 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.44 Å
ligand	ZN	enzyme	Ligase E.C.6.3.2 BRENDA
Primary reference	The PHD Finger of Human UHRF1 Reveals a New Subgroup of Unmethylated Histone H3 Tail Readers., Lallous N, Legrand P, McEwen AG, Ramon-Maiques S, Samama JP, Birck C, PLoS One. 2011;6(11):e27599. Epub 2011 Nov 11. PMID:22096602

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (27 Kb) [Save to disk] Biological Unit Coordinates (3zvz.pdb1.gz) 23 Kb LPC: Ligand-Protein Contacts for 3ZVZ CSU: Contacts of Structural Units for 3ZVZ Structure Factors (447 Kb) Retrieve 3ZVZ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3ZVZ from S2C, [Save to disk] Re-refined 3zvz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3ZVZ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz. On AstexViewer, from MSD-EBI (viewer documentation). On RasMol (Install RasMol freeware) Here's help on how to use RasMol.

Visual 3D analysis of 3ZVZ

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 3ZVZ, from MSDmotif at EBI Fold representative 3zvz from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3zvz_B] SWISS-PROT database: Domain organization of by SWISSPFAM Alignments of the sequence of 3ZVZ with the sequences similar proteins can be viewed for 3ZVZ's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list. A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.

Other resources with information on 3ZVZ

Community annotation for 3ZVZ at PDBWiki (http://pdbwiki.org)

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