3BIF	Transferase	date	May 05, 1999
title	6-Phosphofructo-2-Kinasefructose-2,6-Bisphosphatase Empty 6 Active Site
authors	M.H.Yuen, C.A.Hasemann
compound		source
Molecule: Protein (6-Phosphofructo-2-Kinase Fructose-2,6- Bisphosphatase); Chain: A Ec: 2.7.1.105 Engineered: Yes Mutation: Yes Other_details: Bifunctional Enzyme, Also Ec 3.1.3.46		Organism_scientific: Rattus Norvegicus Organism_common: Norway Rat Organism_taxid: 10116 Cell_line: Bl21 Organ: Testis Gene: Rt2k Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_cell_line: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pt7-7 Expression_system_gene: Rt2k
symmetry	Space Group: C 1 2 1	R_factor 0.197 R_Free 0.243
crystal cell	length a length b length c angle alpha angle beta angle gamma 106.700 108.700 71.700 90.00 129.50 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	BOG, PO4, SIN	enzyme	Transferase E.C.2.7.1.105 BRENDA
related structures	by homologous chain: 1TIP, 2BIF
Gene Ontology	Chain Function Process Component A 6-phosphofructo-2-kinase act... fructose-2,6-bisphosphate 2-...
Primary reference	A switch in the kinase domain of rat testis 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase., Yuen MH, Wang XL, Mizuguchi H, Uyeda K, Hasemann CA, Biochemistry 1999 Sep 21;38(38):12333-42. PMID:10493801

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk] Biological Unit Coordinates (3bif.pdb1.gz) 150 Kb LPC: Ligand-Protein Contacts for 3BIF CSU: Contacts of Structural Units for 3BIF Likely Quarternary Molecular Structure file(s) for 3BIF Structure Factors (65 Kb) Retrieve 3BIF in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3BIF from S2C, [Save to disk]

View 3BIF in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3BIF

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3BIF, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d3bifa2, region A:250-468 [Jmol] [rasmolscript] [script source]     - Domain d3bifa1, region A:37-249 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3bif] [3bif_A] SWISS-PROT database: [P25114] Domain organization of [F264_RAT] by SWISSPFAM Domain found in 3BIF: [PGAM ] by SMART

Other resources with information on 3BIF

Community annotation for 3BIF at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---