3BIF Transferase date May 05, 1999
title 6-Phosphofructo-2-Kinasefructose-2,6-Bisphosphatase Empty 6 Active Site
authors M.H.Yuen, C.A.Hasemann
compound source
Molecule: Protein (6-Phosphofructo-2-Kinase Fructose-2,6- Bisphosphatase);
Chain: A
Engineered: Yes
Mutation: Yes
Other_details: Bifunctional Enzyme, Also Ec
Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Cell_line: Bl21
Organ: Testis
Gene: Rt2k
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_cell_line: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pt7-7
Expression_system_gene: Rt2k
symmetry Space Group: C 1 2 1
R_factor 0.197 R_Free 0.243
length a length b length c angle alpha angle beta angle gamma
106.700 108.700 71.700 90.00 129.50 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand BOG, PO4, SIN enzyme Transferase E.C. BRENDA
related structures by homologous chain: 1TIP, 2BIF
  • 6-phosphofructo-2-kinase act...
  • fructose-2,6-bisphosphate 2-...

  • Primary referenceA switch in the kinase domain of rat testis 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase., Yuen MH, Wang XL, Mizuguchi H, Uyeda K, Hasemann CA, Biochemistry 1999 Sep 21;38(38):12333-42. PMID:10493801
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (3bif.pdb1.gz) 150 Kb
  • LPC: Ligand-Protein Contacts for 3BIF
  • CSU: Contacts of Structural Units for 3BIF
  • Likely Quarternary Molecular Structure file(s) for 3BIF
  • Structure Factors (65 Kb)
  • Retrieve 3BIF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BIF from S2C, [Save to disk]
  • View 3BIF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3BIF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3BIF, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d3bifa2, region A:250-468 [Jmol] [rasmolscript] [script source]
        - Domain d3bifa1, region A:37-249 [Jmol] [rasmolscript] [script source]
  • Fold representative 3bif from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3bif] [3bif_A]
  • SWISS-PROT database: [P25114]
  • Domain organization of [F264_RAT] by SWISSPFAM
  • Domain found in 3BIF: [PGAM ] by SMART
  • Other resources with information on 3BIF
  • Community annotation for 3BIF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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