3CF5 Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans date
authors Harms, J.M., Wilson, D.N., Schluenzen, F., Connell, S.R., Stachelhaus, T., Zaborowska, Z., Spahn, C.M.T., Fucini, P.
compound source
symmetry
R_factor
R_Free 0.318
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.30
ligand BB9, DBU, DCY, DHA, MG, MH6, NH2, QUA, TS9 enzyme
Gene
Ontology
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Primary referenceTranslational regulation via L11: molecular switches on the ribosome turned on and off by thiostrepton and micrococcin., Harms JM, Wilson DN, Schluenzen F, Connell SR, Stachelhaus T, Zaborowska Z, Spahn CM, Fucini P, Mol Cell. 2008 Apr 11;30(1):26-38. PMID:18406324
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1677 Kb) [Save to disk]
  • Biological Unit Coordinates (3cf5.pdb1.gz) 1663 Kb
  • LPC: Ligand-Protein Contacts for 3CF5
  • CSU: Contacts of Structural Units for 3CF5
  • Likely Quarternary Molecular Structure file(s) for 3CF5
  • Structure Factors (3046 Kb)
  • Retrieve 3CF5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CF5 from S2C, [Save to disk]
  • Re-refined 3cf5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3CF5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3CF5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3CF5, from MSDmotif at EBI
  • Fold representative 3cf5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3cf5_E] [3cf5_D] [3cf5_1] [3cf5_L] [3cf5_J] [3cf5_B] [3cf5_X] [3cf5_H] [3cf5_P] [3cf5_V] [3cf5_O] [3cf5_M] [3cf5_Q] [3cf5_2] [3cf5_4] [3cf5_G] [3cf5_S] [3cf5_K] [3cf5_5] [3cf5_F] [3cf5_U] [3cf5_C] [3cf5] [3cf5_I] [3cf5_3] [3cf5_Y] [3cf5_Z] [3cf5_A] [3cf5_T] [3cf5_W] [3cf5_R] [3cf5_N]
  • SWISS-PROT database: [Q9RSS7] [Q9RXY1] [Q9RXJ2] [Q9RSK9] [Q9RXJ5] [Q9RSJ5] [Q9RSL2] [Q9RWB4] [Q9RSW7] [Q9RY64] [Q9RXJ7] [Q9RXK0] [Q9RXJ1] [Q9RX88] [Q9RY65] [Q9RRG8] [Q9RXJ4] [Q9RXJ9] [Q9RSL0] [P49228] [Q9RSS4] [Q9RSH2] [Q9RSW6] [Q9RSK0] [Q9RXK2] [Q9RXK1] [Q9RXJ0] [Q9RSL3]
  • Domain organization of [RL11_DEIRA] [RL13_DEIRA] [RL14_DEIRA] [RL15_DEIRA] [RL16_DEIRA] [RL17_DEIRA] [RL18_DEIRA] [RL19_DEIRA] [RL20_DEIRA] [RL21_DEIRA] [RL22_DEIRA] [RL23_DEIRA] [RL24_DEIRA] [RL25_DEIRA] [RL27_DEIRA] [RL28_DEIRA] [RL29_DEIRA] [RL2_DEIRA] [RL30_DEIRA] [RL32_DEIRA] [RL33_DEIRA] [RL34_DEIRA] [RL35_DEIRA] [RL36_DEIRA] [RL3_DEIRA] [RL4_DEIRA] [RL5_DEIRA] [RL6_DEIRA] by SWISSPFAM
  • Domains found in 3CF5: [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C ] by SMART
  • Other resources with information on 3CF5
  • Community annotation for 3CF5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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