3CY2	Transferase	date	Apr 25, 2008
title	Crystal Structure Of Human Proto-Oncogene Serine Threonine K (Pim1) In Complex With A Consensus Peptide And A Beta Carbo Ligand II
authors	P.Filippakopoulos, A.Bullock, O.Fedorov, K.Huber, F.Bracher, A.C. F.Von Delft, C.H.Arrowsmith, A.M.Edwards, C.Bountra, S.Knapp, St Genomics Consortium (Sgc)
compound		source
Molecule: Proto-Oncogene Serinethreonine-Protein Kinase Pi Isoform 2; Chain: A Ec: 2.7.11.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Gene: Pim1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)-R3 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pnic28-Bsa4
Molecule: Pimtide Peptide Chain: B Engineered: Yes		Synthetic: Yes Other_details: Synthetic Peptide
symmetry	Space Group: P 65	R_factor 0.167 R_Free 0.199
crystal cell	length a length b length c angle alpha angle beta angle gamma 98.668 98.668 81.129 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.01 Å
ligand	CL, EDO, MB9	enzyme	Transferase E.C.2.7.11.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	7,8-Dichloro-1-oxo-beta-carbolines as a Versatile Scaffold for the Development of Potent and Selective Kinase Inhibitors with Unusual Binding Modes., Huber K, Brault L, Fedorov O, Gasser C, Filippakopoulos P, Bullock AN, Fabbro D, Trappe J, Schwaller J, Knapp S, Bracher F, J Med Chem. 2012 Jan 12;55(1):403-13. Epub 2012 Jan 3. PMID:22136433

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk] Biological Unit Coordinates (3cy2.pdb1.gz) 51 Kb LPC: Ligand-Protein Contacts for 3CY2 CSU: Contacts of Structural Units for 3CY2 Likely Quarternary Molecular Structure file(s) for 3CY2 Structure Factors (454 Kb) Retrieve 3CY2 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3CY2 from S2C, [Save to disk] Re-refined 3cy2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3CY2 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3CY2

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3CY2, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3cy2] [3cy2_B] [3cy2_A] SWISS-PROT database: [P11309] Domain organization of [PIM1_HUMAN] by SWISSPFAM Domain found in 3CY2: [S_TKc ] by SMART

Other resources with information on 3CY2

Community annotation for 3CY2 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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