3DLP	Ligase	date	Jun 28, 2008
title	4-Chlorobenzoyl-Coa Ligasesynthetase, Mutant D402p, Bound T
authors	R.Wu, J.Cao, A.S.Reger, X.Lu, A.M.Gulick, D.Dunaway-Mariano
compound		source
Molecule: 4-Chlorobenzoate Coa Ligasesynthetase Chain: X Ec: 6.2.1.33 Engineered: Yes Mutation: Yes		Organism_scientific: Alcaligenes Sp. Strain: Al3007 Expression_system: Escherichia Coli Expression_system_strain: Jm109 Expression_system_vector: Pqe-70
symmetry	Space Group: P 32 2 1	R_factor 0.206 R_Free 0.252
crystal cell	length a length b length c angle alpha angle beta angle gamma 127.922 127.922 71.230 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.60 Å
ligand	174	enzyme	Ligase E.C.6.2.1.33 BRENDA
Gene Ontology	Chain Function Process Component X
Primary reference	The Mechanism of Domain Alternation in the Acyl-Adenylate Forming Ligase Superfamily Member 4-Chlorobenzoate: Coenzyme A Ligase (,)., Wu R, Reger AS, Lu X, Gulick AM, Dunaway-Mariano D, Biochemistry. 2009 Apr 6. PMID:19320426

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk] Biological Unit Coordinates (3dlp.pdb1.gz) 147 Kb LPC: Ligand-Protein Contacts for 3DLP CSU: Contacts of Structural Units for 3DLP Likely Quarternary Molecular Structure file(s) for 3DLP Structure Factors (302 Kb) Retrieve 3DLP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3DLP from S2C, [Save to disk] Re-refined 3dlp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3DLP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3DLP

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3DLP, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3dlp_X] [3dlp] SWISS-PROT database: [Q8GN86] Domain organization of [Q8GN86_9BURK] by SWISSPFAM

Other resources with information on 3DLP

Community annotation for 3DLP at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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