3F78 Crystal structure of wild type LFA1 I domain complexed with isoflurane date
authors Zhang, H., Wang, J.H.
compound source
symmetry
R_factor
R_Free 0.181
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.60
ligand GOL, ICF, MG enzyme
Primary referenceCrystal structure of isoflurane bound to integrin LFA-1 supports a unified mechanism of volatile anesthetic action in the immune and central nervous systems., Zhang H, Astrof NS, Liu JH, Wang JH, Shimaoka M, FASEB J. 2009 Mar 30. PMID:19332643
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (111 Kb) [Save to disk]
  • Biological Unit Coordinates (3f78.pdb1.gz) 36 Kb
  • Biological Unit Coordinates (3f78.pdb2.gz) 37 Kb
  • Biological Unit Coordinates (3f78.pdb3.gz) 35 Kb
  • LPC: Ligand-Protein Contacts for 3F78
  • CSU: Contacts of Structural Units for 3F78
  • Likely Quarternary Molecular Structure file(s) for 3F78
  • Structure Factors (1533 Kb)
  • Retrieve 3F78 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3F78 from S2C, [Save to disk]
  • Re-refined 3f78 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3F78 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3F78
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3F78, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3f78_C] [3f78] [3f78_B] [3f78_A]
  • SWISS-PROT database: [P20701]
  • Domain organization of [ITAL_HUMAN] by SWISSPFAM
  • Domain found in 3F78: [VWA ] by SMART
  • Other resources with information on 3F78
  • Community annotation for 3F78 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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