3F7O Hydrolase date Nov 10, 2008
title Crystal Structure Of Cuticle-Degrading Protease From Paecilo Lilacinus (Pl646)
authors L.Liang, Z.Lou, Z.Meng, Z.Rao, K.Zhang
compound source
Molecule: Serine Protease
Chain: A, B
 Organism_scientific: Purpureocillium Lilacinum
Organism_taxid: 33203
Collection: Supernatant
Plasmid: Pmd18-T

Molecule: (Msu)(Ala)(Ala)(Pro)(Val)
Chain: X, Y
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 1 21 1
R_factor 0.229 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.108 62.536 67.562 90.00 92.76 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand CA, HMB, MSU enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe crystal structures of two cuticle-degrading proteases from nematophagous fungi and their contribution to infection against nematodes., Liang L, Meng Z, Ye F, Yang J, Liu S, Sun Y, Guo Y, Mi Q, Huang X, Zou C, Rao Z, Lou Z, Zhang KQ, FASEB J. 2010 May;24(5):1391-400. doi: 10.1096/fj.09-136408. Epub 2009 Dec 9. PMID:20007510
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk]
  • Biological Unit Coordinates (3f7o.pdb1.gz) 47 Kb
  • Biological Unit Coordinates (3f7o.pdb2.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 3F7O
  • CSU: Contacts of Structural Units for 3F7O
  • Structure Factors (434 Kb)
  • Retrieve 3F7O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3F7O from S2C, [Save to disk]
  • Re-refined 3f7o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3F7O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3F7O
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3F7O, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3f7o_B] [3f7o_A] [3f7o_Y] [3f7o_X] [3f7o]
  • SWISS-PROT database: [Q01471]
  • Domain organization of [Q01471_9HYPO] by SWISSPFAM
    • Other resources with information on 3F7O
  • Community annotation for 3F7O at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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