3GK1 X-ray structure of bovine SBi132,Ca(2+)-S100B date
authors Charpentier, T.H., Weber, D.J., Toth, E.A.
compound source
symmetry
R_factor
R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.10
ligand 32A, CA, CAC enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • kinase inhibitor activity


  • Primary referenceSmall molecules bound to unique sites in the target protein binding cleft of calcium-bound S100B as characterized by nuclear magnetic resonance (NMR) and X-ray crystallography., Charpentier TH, Wilder PT, Liriano MA, Varney KM, Zhong S, Coop A, Pozharski E, Mackerell AD, Toth EA, Weber DJ, Biochemistry. 2009 May 26. PMID:19469484
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (21 Kb) [Save to disk]
  • Biological Unit Coordinates (3gk1.pdb1.gz) 31 Kb
  • LPC: Ligand-Protein Contacts for 3GK1
  • CSU: Contacts of Structural Units for 3GK1
  • Likely Quarternary Molecular Structure file(s) for 3GK1
  • Structure Factors (80 Kb)
  • Retrieve 3GK1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GK1 from S2C, [Save to disk]
  • Re-refined 3gk1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3GK1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3GK1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3GK1, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3gk1] [3gk1_A]
  • SWISS-PROT database: [P02638]
  • Domain organization of [S100B_BOVIN] by SWISSPFAM
  • Domain found in 3GK1: [S_100 ] by SMART
  • Other resources with information on 3GK1
  • Community annotation for 3GK1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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