3GOY Transferase Transferase Inhibitor date Mar 20, 2009
title Crystal Structure Of Human Poly(Adp-Ribose) Polymerase 14, C Fragment In Complex With An Inhibitor 3-Aminobenzamide
authors T.Karlberg, M.Moche, L.Lehtio, C.H.Arrowsmith, H.Berglund, C.Boun R.Collins, A.M.Edwards, S.Flodin, A.Flores, S.Graslund, M.Hammar A.Johansson, I.Johansson, T.Kotenyova, P.Nordlund, T.Nyman, C.Pe J.Sagemark, P.Schutz, M.I.Siponen, A.G.Thorsell, L.Tresaugues, S Berg, J.Weigelt, M.Welin, M.Wisniewska, H.Schuler, Structural Ge Consortium (Sgc)
compound source
Molecule: Poly [Adp-Ribose] Polymerase 14
Chain: A, B, C, D
Fragment: Catalytic Domain, Residues 1530-1720
Synonym: Parp-14, B Aggressive Lymphoma Protein 2
Ec: 2.4.2.30
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bal2, Kiaa1268, Parp14
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3) R3 Prare
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic-Bsa4
symmetry Space Group: C 1 2 1
R_factor 0.253 R_Free 0.292
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.750 144.270 79.700 90.00 100.55 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand 3AB enzyme Transferase E.C.2.4.2.30 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceFamily-wide chemical profiling and structural analysis of PARP and tankyrase inhibitors., Wahlberg E, Karlberg T, Kouznetsova E, Markova N, Macchiarulo A, Thorsell AG, Pol E, Frostell A, Ekblad T, Oncu D, Kull B, Robertson GM, Pellicciari R, Schuler H, Weigelt J, Nat Biotechnol. 2012 Feb 19. doi: 10.1038/nbt.2121. PMID:22343925
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (256 Kb) [Save to disk]
  • Biological Unit Coordinates (3goy.pdb1.gz) 64 Kb
  • Biological Unit Coordinates (3goy.pdb2.gz) 64 Kb
  • Biological Unit Coordinates (3goy.pdb3.gz) 64 Kb
  • Biological Unit Coordinates (3goy.pdb4.gz) 65 Kb
  • LPC: Ligand-Protein Contacts for 3GOY
  • CSU: Contacts of Structural Units for 3GOY
  • Likely Quarternary Molecular Structure file(s) for 3GOY
  • Structure Factors (314 Kb)
  • Retrieve 3GOY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GOY from S2C, [Save to disk]
  • Re-refined 3goy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3GOY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3GOY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3GOY, from MSDmotif at EBI
  • Fold representative 3goy from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3goy_C] [3goy_D] [3goy] [3goy_A] [3goy_B]
  • SWISS-PROT database: [Q460N5]
  • Domain organization of [PAR14_HUMAN] by SWISSPFAM
  • Other resources with information on 3GOY
  • Community annotation for 3GOY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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