3OK2 Rna date Aug 24, 2010
title Crystal Structure Of The Ana:Rna Decamer Without Lattice Tra Defects
authors M.Ovaere, L.Van Meervelt
compound source
Molecule: (A6c)(A6c)(A6g)(A6u)(A6a)(A6a)(A6u)(A6g)(A6c)(A6c
Chain: A, C, E
Engineered: Yes
 Synthetic: Yes
Other_details: Molecule Was Synthesized

Molecule: Ggcauuacgg
Chain: B, D, F
Engineered: Yes
Synthetic: Yes
Other_details: Molecule Was Synthesized
symmetry Space Group: P 21 21 21
R_factor 0.224 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
26.070 42.510 157.790 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.96 Å
ligand A6A, A6C, A6G, A6U, PO4 enzyme
Primary referenceHow does hydroxyl introduction influence the double helical structure: the stabilization of an altritol nucleic acid:ribonucleic acid duplex., Ovaere M, Sponer J, Sponer JE, Herdewijn P, Van Meervelt L, Nucleic Acids Res. 2012 Aug;40(15):7573-83. Epub 2012 May 25. PMID:22638588
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk]
  • Biological Unit Coordinates (3ok2.pdb1.gz) 11 Kb
  • Biological Unit Coordinates (3ok2.pdb2.gz) 11 Kb
  • Biological Unit Coordinates (3ok2.pdb3.gz) 11 Kb
  • LPC: Ligand-Protein Contacts for 3OK2
  • CSU: Contacts of Structural Units for 3OK2
  • Structure Factors (588 Kb)
  • Retrieve 3OK2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OK2 from S2C, [Save to disk]
  • Re-refined 3ok2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3OK2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3OK2
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3OK2, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ok2_F] [3ok2_A] [3ok2] [3ok2_B] [3ok2_E] [3ok2_C] [3ok2_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3OK2
  • Community annotation for 3OK2 at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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