3RS9 Crystal structure of tm0922, a fusion of a domain of unknown function and ADP/ATP-dependent NAD(P)H-hydrate dehydratase from Thermotoga maritima in complex with P1,P3-Di(adenosine-5') triphosphate date
authors Shumilin, I.A., Cymborowski, M., Lesley, S.A., Minor, W.
compound source
symmetry
R_factor
R_Free 0.193
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.10
ligand BA3, GOL, K, MG enzyme
Gene TM
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceIdentification of Unknown Protein Function Using Metabolite Cocktail Screening., Shumilin IA, Cymborowski M, Chertihin O, Jha KN, Herr JC, Lesley SA, Joachimiak A, Minor W, Structure. 2012 Aug 28. PMID:22940582
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (167 Kb) [Save to disk]
  • Biological Unit Coordinates (3rs9.pdb1.gz) 1226 Kb
  • LPC: Ligand-Protein Contacts for 3RS9
  • CSU: Contacts of Structural Units for 3RS9
  • Structure Factors (528 Kb)
  • Retrieve 3RS9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3RS9 from S2C, [Save to disk]
  • Re-refined 3rs9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3RS9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3RS9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3RS9, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3rs9] [3rs9_A] [3rs9_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3RS9
  • Community annotation for 3RS9 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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