3SFX Transferase Transferase Inhibitor date Jun 14, 2011
title Cryptococcus Neoformans Protein Farnesyltransferase In Compl Fpt-II And Tipifarnib
authors M.A.Hast, L.S.Beese
compound source
Molecule: Cryptococcus Neoformans Protein Farnesyltransfera Subunit;
Chain: A
Engineered: Yes
Organism_scientific: Cryptococcus Neoformans
Organism_taxid: 235443
Strain: H99
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Cryptococcus Neoformans Protein Farnesyltransfera Subunit;
Chain: B
Engineered: Yes

Organism_scientific: Cryptococcus Neoformans
Organism_taxid: 235443
Strain: H99
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 43 21 2
R_factor 0.180 R_Free 0.199
crystal
cell
length a length b length c angle alpha angle beta angle gamma
142.176 142.176 130.096 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand 3FX, FII, JAN, SO4, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceStructures of Cryptococcus neoformans Protein Farnesyltransferase Reveal Strategies for Developing Inhibitors That Target Fungal Pathogens., Hast MA, Nichols CB, Armstrong SM, Kelly SM, Hellinga HW, Alspaugh JA, Beese LS, J Biol Chem. 2011 Oct 7;286(40):35149-62. Epub 2011 Aug 4. PMID:21816822
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (276 Kb) [Save to disk]
  • Biological Unit Coordinates (3sfx.pdb1.gz) 269 Kb
  • LPC: Ligand-Protein Contacts for 3SFX
  • CSU: Contacts of Structural Units for 3SFX
  • Structure Factors (652 Kb)
  • Retrieve 3SFX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3SFX from S2C, [Save to disk]
  • Re-refined 3sfx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3SFX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3SFX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3SFX, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3sfx_B] [3sfx_A] [3sfx]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3SFX
  • Community annotation for 3SFX at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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