3U9Y Transferase Transferase Inhibitor date Oct 20, 2011
title Crystal Structure Of Human Tankyrase 2 Catalytic Domain In C With Olaparib
authors M.Narwal, L.Lehtio
compound source
Molecule: Tankyrase-2
Chain: A
Fragment: C-Terminal Fragment, Unp Residues 946-1162
Synonym: Tank2, Poly [Adp-Ribose] Polymerase 5b, Tnks-2, Tr Interacting Ankyrin-Related Adp-Ribose Polymerase 2, Tankyr Tankyrase-Like Protein, Tankyrase-Related Protein;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tnks2, Parp5b, Tank2, Tnkl
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Rosetta 2(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic-Bsa4
symmetry Space Group: P 41 21 2
R_factor 0.181 R_Free 0.234
length a length b length c angle alpha angle beta angle gamma
66.560 66.560 115.920 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand 09L, GOL, SO4, ZN BindingDB enzyme Transferase E.C. BRENDA

Primary referenceStructural Basis of Selective Inhibition of Human Tankyrases., Narwal M, Venkannagari H, Lehtio L, J Med Chem. 2012 Jan 10. PMID:22233320
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk]
  • Biological Unit Coordinates (3u9y.pdb1.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 3U9Y
  • CSU: Contacts of Structural Units for 3U9Y
  • Structure Factors (181 Kb)
  • Retrieve 3U9Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3U9Y from S2C, [Save to disk]
  • Re-refined 3u9y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3U9Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3U9Y
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3U9Y, from MSDmotif at EBI
  • Fold representative 3u9y from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3u9y_A] [3u9y]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3U9Y
  • Community annotation for 3U9Y at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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