3UR9 Hydrolase Hydrolase Inhibitor date Nov 21, 2011
title 1.65a Resolution Structure Of Norwalk Virus Protease Contain Covalently Bound Dipeptidyl Inhibitor
authors S.Lovell, K.P.Battaile, Y.Kim, K.C.Tiew, S.R.Mandadapu, K.R.Allis W.C.Groutas, K.O.Chang
compound source
Molecule: 3c-Like Protease
Chain: A, B
Fragment: Unp Residues 1101-1281
Synonym: 3clpro
Ec: 3.4.22.66
Engineered: Yes
Organism_scientific: Norovirus
Organism_taxid: 524364
Strain: Gihumanunited Statesnorwalk1968
Gene: Orf1
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28
symmetry Space Group: P 21 21 21
R_factor 0.178 R_Free 0.212
crystal
cell
length a length b length c angle alpha angle beta angle gamma
37.649 66.865 125.109 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.65 Å
ligand CL, K36 enzyme Hydrolase E.C.3.4.22.66 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceBroad-Spectrum Antivirals against 3C or 3C-like Proteases of Picornaviruses, Noroviruses and Coronaviruses., Kim Y, Lovell S, Tiew KC, Mandadapu SR, Alliston KR, Battaile KP, Groutas WC, Chang KO, J Virol. 2012 Aug 22. PMID:22915796
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (112 Kb) [Save to disk]
  • Biological Unit Coordinates (3ur9.pdb1.gz) 53 Kb
  • Biological Unit Coordinates (3ur9.pdb2.gz) 53 Kb
  • Biological Unit Coordinates (3ur9.pdb3.gz) 104 Kb
  • LPC: Ligand-Protein Contacts for 3UR9
  • CSU: Contacts of Structural Units for 3UR9
  • Structure Factors (1814 Kb)
  • Retrieve 3UR9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3UR9 from S2C, [Save to disk]
  • Re-refined 3ur9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3UR9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3UR9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3UR9, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ur9] [3ur9_B] [3ur9_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3UR9
  • Community annotation for 3UR9 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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