3UR9 1.65A resolution structure of Norwalk Virus Protease Containing a covalently bound dipeptidyl inhibitor date
authors Lovell, S., Battaile, K.P., Kim, Y., Tiew, K.C., Mandadapu, S.R., Alliston, K.R., Groutas, W.C., Chang, K.O.
compound source
symmetry
R_factor
R_Free 0.2119
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.65
ligand CL, K36 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceBroad-Spectrum Antivirals against 3C or 3C-like Proteases of Picornaviruses, Noroviruses and Coronaviruses., Kim Y, Lovell S, Tiew KC, Mandadapu SR, Alliston KR, Battaile KP, Groutas WC, Chang KO, J Virol. 2012 Aug 22. PMID:22915796
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (115 Kb) [Save to disk]
  • Biological Unit Coordinates (3ur9.pdb1.gz) 55 Kb
  • Biological Unit Coordinates (3ur9.pdb2.gz) 54 Kb
  • Biological Unit Coordinates (3ur9.pdb3.gz) 107 Kb
  • LPC: Ligand-Protein Contacts for 3UR9
  • CSU: Contacts of Structural Units for 3UR9
  • Structure Factors (1814 Kb)
  • Retrieve 3UR9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3UR9 from S2C, [Save to disk]
  • Re-refined 3ur9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3UR9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3UR9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3UR9, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ur9] [3ur9_B] [3ur9_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3UR9
  • Community annotation for 3UR9 at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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