3VAS Adenosine kinase from Schistosoma mansoni in complex with adenosine in occluded loop conformation date
authors Romanello, L., Bachega, F.R., Garatt, R.C., DeMarco, R., Brandao-neto, J., Pereira, H.M.
compound source
symmetry
R_factor
R_Free 0.2216
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.26
ligand ADN, CL enzyme
Gene SMP
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceAdenosine kinase from Schistosoma mansoni: structural basis for the differential incorporation of nucleoside analogues., Romanello L, Bachega JF, Cassago A, Brandao-Neto J, Demarco R, Garratt RC, Pereira HD, Acta Crystallogr D Biol Crystallogr. 2013 Jan;69(Pt 1):126-36. doi:, 10.1107/S0907444912044800. Epub 2012 Dec 20. PMID:23275171
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (232 Kb) [Save to disk]
  • Biological Unit Coordinates (3vas.pdb1.gz) 115 Kb
  • Biological Unit Coordinates (3vas.pdb2.gz) 114 Kb
  • LPC: Ligand-Protein Contacts for 3VAS
  • CSU: Contacts of Structural Units for 3VAS
  • Structure Factors (291 Kb)
  • Retrieve 3VAS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3VAS from S2C, [Save to disk]
  • Re-refined 3vas structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3VAS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3VAS
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3VAS, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3vas_A] [3vas_B] [3vas]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3VAS
  • Community annotation for 3VAS at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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