3WB0 Transferase date May 10, 2013
title Hcgb From Methanocaldococcus Jannaschii In Complex With Ligh Decomposed Fegp Cofactor Of [Fe]-Hydrogenase
authors T.Fujishiro, U.Ermler, S.Shima
compound source
Molecule: Uncharacterized Protein Mj0488
Chain: A, B, C, D
Fragment: Unp Residues 3-158
Ec: 2.7.7.-
Engineered: Yes
 Organism_scientific: Methanocaldococcus Jannaschii
Organism_taxid: 243232
Strain: Atcc 43067 Dsm 2661 Jal-1 Jcm 10045 Nbrc 10
Gene: Hcgb, Mj0488
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Star
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28b
symmetry Space Group: P 1 21 1
R_factor 0.227 R_Free 0.275
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.960 119.340 55.650 90.00 115.14 90.00
method X-Ray Diffractionresolution 1.91 Å
ligand FEG enzyme Transferase E.C.2.7.7 BRENDA
Primary referenceIdentification of the HcgB enzyme in [Fe]-hydrogenase-cofactor biosynthesis., Fujishiro T, Tamura H, Schick M, Kahnt J, Xie X, Ermler U, Shima S, Angew Chem Int Ed Engl. 2013 Nov 25;52(48):12555-8. doi: 10.1002/anie.201306745. , Epub 2013 Nov 7. PMID:24249552
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (211 Kb) [Save to disk]
  • Biological Unit Coordinates (3wb0.pdb1.gz) 205 Kb
  • LPC: Ligand-Protein Contacts for 3WB0
  • CSU: Contacts of Structural Units for 3WB0
  • Structure Factors (713 Kb)
  • Retrieve 3WB0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3WB0 from S2C, [Save to disk]
  • Re-refined 3wb0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3WB0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3WB0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3WB0, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3wb0_D] [3wb0] [3wb0_C] [3wb0_B] [3wb0_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3WB0
  • Community annotation for 3WB0 at PDBWiki (http://pdbwiki.org)

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