3XIS A METAL-MEDIATED HYDRIDE SHIFT MECHANISM FOR XYLOSE ISOMERASE BASED ON THE 1.6 ANGSTROMS STREPTOMYCES RUBIGINOSUS STRUCTURES WITH XYLITOL AND D-XYLOSE date
authors Whitlow, M., Howard, A.J.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.60
ligand MG, XLS, XYS enzyme
related structures by homologous chain: 1XIC, 1XIS
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA metal-mediated hydride shift mechanism for xylose isomerase based on the 1.6 A Streptomyces rubiginosus structures with xylitol and D-xylose., Whitlow M, Howard AJ, Finzel BC, Poulos TL, Winborne E, Gilliland GL, Proteins 1991;9(3):153-73. PMID:2006134
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (3xis.pdb1.gz) 269 Kb
  • LPC: Ligand-Protein Contacts for 3XIS
  • CSU: Contacts of Structural Units for 3XIS
  • Likely Quarternary Molecular Structure file(s) for 3XIS
  • Retrieve 3XIS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3XIS from S2C, [Save to disk]
  • View 3XIS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3XIS
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3XIS, from MSDmotif at EBI
  • Genome occurence of 3XIS's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d3xis__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 3xis from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3xis_A] [3xis]
  • SWISS-PROT database: [P24300]
  • Domain organization of [XYLA_STRRU] by SWISSPFAM
  • Other resources with information on 3XIS
  • Community annotation for 3XIS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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