3ZNS	Hydrolase	date	Feb 15, 2013
title	Hdac7 Bound With Tfmo Inhibitor Tmp942
authors	M.Lobera, K.P.Madauss, D.T.Pohlhaus, R.P.Trump, M.A.Nolan
compound		source
Molecule: Histone Deacetylase 7 Chain: A, B, C Fragment: Catalytic Domain Synonym: Hdac7, Hd7, Histone Deacetylase 7a, Hd7a Ec: 3.5.1.98 Engineered: Yes Other_details: Inhibitor		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 32	R_factor 0.18619 R_Free 0.22496
crystal cell	length a length b length c angle alpha angle beta angle gamma 81.570 81.570 150.101 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.45 Å
ligand	K, NU7, ZN	enzyme	Hydrolase E.C.3.5.1.98 BRENDA
Primary reference	Selective class IIa histone deacetylase inhibition via a nonchelating zinc-binding group., Lobera M, Madauss KP, Pohlhaus DT, Wright QG, Trocha M, Schmidt DR, Baloglu E, Trump RP, Head MS, Hofmann GA, Murray-Thompson M, Schwartz B, Chakravorty S, Wu Z, Mander PK, Kruidenier L, Reid RA, Burkhart W, Turunen BJ, Rong JX, Wagner C, Moyer MB, Wells C, Hong X, Moore JT, Williams JD, Soler D, Ghosh S, Nolan MA, Nat Chem Biol. 2013 Mar 24. doi: 10.1038/nchembio.1223. PMID:23524983

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (178 Kb) [Save to disk] Biological Unit Coordinates (3zns.pdb1.gz) 59 Kb Biological Unit Coordinates (3zns.pdb2.gz) 62 Kb Biological Unit Coordinates (3zns.pdb3.gz) 58 Kb LPC: Ligand-Protein Contacts for 3ZNS CSU: Contacts of Structural Units for 3ZNS Structure Factors (685 Kb) Retrieve 3ZNS in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3ZNS from S2C, [Save to disk] Re-refined 3zns structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3ZNS in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3ZNS

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3ZNS, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3zns_C] [3zns_B] [3zns] [3zns_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3ZNS

Community annotation for 3ZNS at PDBWiki (http://pdbwiki.org)

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