456D Dna date Mar 06, 1999
title Molecular And Crystal Structure Of D(Cgcgmo6aatccgcg): The W Crick Type N6-Methoxyadenosinecytidine Base-Pairs In B-Dna
authors T.Chatake, A.Ono, Y.Ueno, A.Matsuda, A.Takenaka
compound source
Molecule: Dna (5'-D(Cpgpcpgp(A47)Paptpcpcpgpcpg
Chain: A, B
Engineered: Yes
Synthetic: Yes
symmetry Space Group: P 21 21 21
R_factor 0.196 R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
25.100 39.900 65.800 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand A47, MG enzyme
Primary referenceCrystallographic studies on damaged DNAs. I. An N(6)-methoxyadenine residue forms a Watson-Crick pair with a cytosine residue in a B-DNA duplex., Chatake T, Ono A, Ueno Y, Matsuda A, Takenaka A, J Mol Biol 1999 Dec 17;294(5):1215-22. PMID:10600379
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (17 Kb) [Save to disk]
  • Biological Unit Coordinates (456d.pdb1.gz) 14 Kb
  • LPC: Ligand-Protein Contacts for 456D
  • CSU: Contacts of Structural Units for 456D
  • Likely Quarternary Molecular Structure file(s) for 456D
  • Retrieve 456D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 456D from S2C, [Save to disk]
  • View 456D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 456D
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 456D, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [456d] [456d_A] [456d_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 456D
  • Community annotation for 456D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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