480D Rna date Jul 20, 1999
title Crystal Structure Of The Sarcinricin Domain From E. Coli 23
authors C.C.Correll, I.G.Wool, A.Munishkin
compound source
Molecule: Sarcinricin Domain From 23 S Rrna
Chain: A
Fragment: Sarcinricin Domain
Engineered: Yes
Synthetic: Yes
symmetry Space Group: P 43
R_factor 0.180 R_Free 0.206
crystal
cell
length a length b length c angle alpha angle beta angle gamma
29.950 29.950 76.420 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
Primary referenceThe two faces of the Escherichia coli 23 S rRNA sarcin/ricin domain: the structure at 1.11 A resolution., Correll CC, Wool IG, Munishkin A, J Mol Biol 1999 Sep 17;292(2):275-87. PMID:10493875
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (17 Kb) [Save to disk]
  • Biological Unit Coordinates (480d.pdb1.gz) 13 Kb
  • CSU: Contacts of Structural Units for 480D
  • Likely Quarternary Molecular Structure file(s) for 480D
  • Structure Factors (108 Kb)
  • Retrieve 480D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 480D from S2C, [Save to disk]
  • Re-refined 480d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 480D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 480D
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 480D, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [480d_A] [480d]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 480D
  • Community annotation for 480D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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